Searched refs:alignmentAlignedBases (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/freebayes/freebayes-1.3.5/src/ |
| H A D | LeftAlign.cpp | 26 string alignmentAlignedBases = alignment.QUERYBASES; in leftAlign() local
54 alignmentAlignedBases.insert(rp + aabOffset, string(l, '-')); in leftAlign()
59 alignmentAlignedBases.insert(rp + aabOffset, string(l, '-')); in leftAlign()
71 softBegin = alignmentAlignedBases.substr(0, l); in leftAlign()
74 softEnd = alignmentAlignedBases.substr(alignmentAlignedBases.size() - l, l); in leftAlign()
88 << "| " << alignmentAlignedBases << endl); in leftAlign()
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| /dports/biology/vcflib/vcflib-1.0.2/src/ |
| H A D | vcfleftalign.cpp | 185 string alignmentAlignedBases = alternateSequence; in leftAlign() local
208 alignmentAlignedBases.insert(rp + aabOffset, string(l, '-')); in leftAlign()
220 softBegin = alignmentAlignedBases.substr(0, l); in leftAlign()
223 softEnd = alignmentAlignedBases.substr(alignmentAlignedBases.size() - l, l); in leftAlign()
237 << "| " << alignmentAlignedBases << endl); in leftAlign()
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
| H A D | vcfleftalign.cpp | 176 string alignmentAlignedBases = alternateSequence; in leftAlign() local
199 alignmentAlignedBases.insert(rp + aabOffset, string(l, '-')); in leftAlign()
211 softBegin = alignmentAlignedBases.substr(0, l); in leftAlign()
214 softEnd = alignmentAlignedBases.substr(alignmentAlignedBases.size() - l, l); in leftAlign()
228 << "| " << alignmentAlignedBases << endl); in leftAlign()
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
| H A D | vcfleftalign.cpp | 176 string alignmentAlignedBases = alternateSequence; in leftAlign() local
199 alignmentAlignedBases.insert(rp + aabOffset, string(l, '-')); in leftAlign()
211 softBegin = alignmentAlignedBases.substr(0, l); in leftAlign()
214 softEnd = alignmentAlignedBases.substr(alignmentAlignedBases.size() - l, l); in leftAlign()
228 << "| " << alignmentAlignedBases << endl); in leftAlign()
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