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Searched refs:allocInt2D (Results 1 – 9 of 9) sorted by relevance

/dports/biology/bbmap/bbmap/current/kmer/
H A DHashArray2D.java25 values=allocInt2D(prime+extra); in HashArray2D()
162 values=allocInt2D(prime+extra); in resize()
H A DAbstractKmerTable.java161 final static int[][] allocInt2D(int len){ in allocInt2D() method in AbstractKmerTable
162 return KillSwitch.allocInt2D(len); in allocInt2D()
/dports/biology/bbmap/bbmap/current/ukmer/
H A DHashArrayU2D.java25 values=allocInt2D(prime+extra); in HashArrayU2D()
235 values=allocInt2D(prime+extra); in resize()
H A DAbstractKmerTableU.java206 final static int[][] allocInt2D(int len){ in allocInt2D() method in AbstractKmerTableU
207 return KillSwitch.allocInt2D(len); in allocInt2D()
/dports/biology/bbmap/bbmap/current/shared/
H A DKillSwitch.java244 public static final int[][] allocInt2D(int x){ in allocInt2D() method in KillSwitch
254 public static final int[][] allocInt2D(int x, int y){ in allocInt2D() method in KillSwitch
/dports/biology/bbmap/bbmap/current/aligner/
H A DSingleStateAlignerFlat.java72 packed=KillSwitch.allocInt2D(maxRows+1, maxColumns+1); in initialize()
77 packed=KillSwitch.allocInt2D(maxRows+1); in initialize()
H A DSingleStateAlignerFlat2.java56 packed=KillSwitch.allocInt2D(maxRows+1, maxColumns+1); in initialize()
62 packed=KillSwitch.allocInt2D(maxRows+1); in initialize()
H A DSingleStateAlignerFlat3.java56 packed=KillSwitch.allocInt2D(maxRows+1, maxColumns+1); in initialize()
62 packed=KillSwitch.allocInt2D(maxRows+1); in initialize()
H A DSingleStateAlignerFlat2Amino.java56 packed=KillSwitch.allocInt2D(maxRows+1, maxColumns+1); in initialize()
61 packed=KillSwitch.allocInt2D(maxRows+1); in initialize()