Searched refs:aln_ids (Results 1 – 3 of 3) sorted by relevance
514 TAlnSeqIdIRef anchor_id = aln_ids[anchor]; in BOOST_AUTO_TEST_CASE()517 TAlnSeqIdIRef row_id = aln_ids[row]; in BOOST_AUTO_TEST_CASE()520 CAlnUserOptions::eBothDirections, &aln_ids); in BOOST_AUTO_TEST_CASE()603 TAlnSeqIdIRef anchor_id = aln_ids[anchor]; in BOOST_AUTO_TEST_CASE()606 TAlnSeqIdIRef row_id = aln_ids[row]; in BOOST_AUTO_TEST_CASE()609 CAlnUserOptions::eBothDirections, &aln_ids); in BOOST_AUTO_TEST_CASE()764 const TScopeAlnStats::TIdVec& aln_ids = aln_stats->GetAnchorIdVec(); in BOOST_AUTO_TEST_CASE() local766 TAlnSeqIdIRef anchor_id = aln_ids[anchor_idx]; in BOOST_AUTO_TEST_CASE()840 const TScopeAlnStats::TIdVec& aln_ids = aln_stats->GetAnchorIdVec(); in BOOST_AUTO_TEST_CASE() local842 TAlnSeqIdIRef anchor_id = aln_ids[anchor_idx]; in BOOST_AUTO_TEST_CASE()[all …]
715 CVDBValueFor<uint64_t> aln_ids(ref_curs, aln_ids_col); in Run() local717 aln_count += aln_ids.size(); in Run()737 CVDBValueFor<uint64_t> aln_ids(ref_curs, aln_ids_col); in Run() local739 aln_count = aln_ids.size(); in Run()
862 CVDBValueFor<TVDBRowId> aln_ids; in GetAlnOverStarts() local867 aln_ids = ref->SECONDARY_ALIGNMENT_IDS(info.m_RowFirst); in GetAlnOverStarts()870 aln_ids = ref->PRIMARY_ALIGNMENT_IDS(info.m_RowFirst); in GetAlnOverStarts()872 if ( aln_ids.empty() ) { in GetAlnOverStarts()876 for ( auto aln_id : aln_ids ) { in GetAlnOverStarts()