Searched refs:alphaCharSize (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/ |
| H A D | SmithWatermanAlgorithmSSE2.cpp | 136 int i, j, alphaCharSize, k, max1; in calculateMatrixForMultipleAlignmentResultWithShort() local
142 alphaCharSize = iter * 2; in calculateMatrixForMultipleAlignmentResultWithShort()
143 …__m128i *buf, *matrix = (__m128i *)_mm_malloc((alphaCharSize + iter * 0x80) * 16 + iter * 8 * 4 + … in calculateMatrixForMultipleAlignmentResultWithShort()
144 short *score, *score1 = (short *)(matrix + alphaCharSize); in calculateMatrixForMultipleAlignmentResultWithShort()
147 memset(matrix, 0, alphaCharSize * sizeof(__m128i)); in calculateMatrixForMultipleAlignmentResultWithShort()
153 for (k = j, alphaCharSize = 0; alphaCharSize < 8; alphaCharSize++, k += iter) { in calculateMatrixForMultipleAlignmentResultWithShort()
160 alphaCharSize = alphaChars.size(); in calculateMatrixForMultipleAlignmentResultWithShort()
161 for (i = 0; i < alphaCharSize; i++) { in calculateMatrixForMultipleAlignmentResultWithShort()
281 alphaCharSize = 0; in calculateMatrixForMultipleAlignmentResultWithShort()
287 alphaCharSize = k; in calculateMatrixForMultipleAlignmentResultWithShort()
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