| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | seg.c | 1222 Int4Ptr alphaindex; in AA20alpha() local
1285 palpha->alphaindex = alphaindex; in AA20alpha()
1298 Int4Ptr alphaindex; in NA4alpha() local
1331 palpha->alphaindex = alphaindex; in NA4alpha()
1345 MemFree (palpha->alphaindex); in AlphaFree()
1374 pbeta->alphaindex[i] = palpha->alphaindex[i]; in AlphaCopy()
1447 Int4Ptr alphaindex; in shiftwin1() local
1452 alphaindex = win->palpha->alphaindex; in shiftwin1()
1499 Int4Ptr alphaindex; in compon() local
1504 alphaindex = win->palpha->alphaindex; in compon()
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| H A D | seg.h | 87 Int4Ptr alphaindex; member
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| /dports/biology/diamond/diamond-2.0.13/src/lib/blast/ |
| H A D | blast_seg.cpp | 1388 sfree (palpha->alphaindex); in s_AlphaFree()
1480 int32_t* alphaindex; in s_CompOn() local
1485 alphaindex = win->palpha->alphaindex; in s_CompOn()
1496 comp[alphaindex[letter]]++; in s_CompOn()
1661 int32_t* alphaindex; in s_ShiftWin1() local
1666 alphaindex = win->palpha->alphaindex; in s_ShiftWin1()
1675 s_DecrementSV(win->state, comp[alphaindex[j]]--); in s_ShiftWin1()
1682 s_IncrementSV(win->state, comp[alphaindex[j]]++); in s_ShiftWin1()
2168 int32_t* alphaindex; in s_AA20alphaStd() local
2188 alphaindex[c] = i; in s_AA20alphaStd()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_seg.c | 1394 sfree (palpha->alphaindex); in s_AlphaFree()
1486 Int4* alphaindex; in s_CompOn() local
1491 alphaindex = win->palpha->alphaindex; in s_CompOn()
1502 comp[alphaindex[letter]]++; in s_CompOn()
1677 Int4* alphaindex; in s_ShiftWin1() local
1682 alphaindex = win->palpha->alphaindex; in s_ShiftWin1()
2192 Int4* alphaindex; in s_AA20alphaStd() local
2204 alphaindex = (Int4*) calloc(kCharSet , sizeof(Int4)); in s_AA20alphaStd()
2211 alphaindex[c] = i; in s_AA20alphaStd()
2214 alphaflag[c] = TRUE; alphaindex[c] = 20; in s_AA20alphaStd()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_seg.c | 1394 sfree (palpha->alphaindex); in s_AlphaFree()
1486 Int4* alphaindex; in s_CompOn() local
1491 alphaindex = win->palpha->alphaindex; in s_CompOn()
1502 comp[alphaindex[letter]]++; in s_CompOn()
1677 Int4* alphaindex; in s_ShiftWin1() local
1682 alphaindex = win->palpha->alphaindex; in s_ShiftWin1()
2192 Int4* alphaindex; in s_AA20alphaStd() local
2204 alphaindex = (Int4*) calloc(kCharSet , sizeof(Int4)); in s_AA20alphaStd()
2211 alphaindex[c] = i; in s_AA20alphaStd()
2214 alphaflag[c] = TRUE; alphaindex[c] = 20; in s_AA20alphaStd()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_seg.c | 1394 sfree (palpha->alphaindex); in s_AlphaFree()
1486 Int4* alphaindex; in s_CompOn() local
1491 alphaindex = win->palpha->alphaindex; in s_CompOn()
1502 comp[alphaindex[letter]]++; in s_CompOn()
1677 Int4* alphaindex; in s_ShiftWin1() local
1682 alphaindex = win->palpha->alphaindex; in s_ShiftWin1()
2192 Int4* alphaindex; in s_AA20alphaStd() local
2204 alphaindex = (Int4*) calloc(kCharSet , sizeof(Int4)); in s_AA20alphaStd()
2211 alphaindex[c] = i; in s_AA20alphaStd()
2214 alphaflag[c] = TRUE; alphaindex[c] = 20; in s_AA20alphaStd()
[all …]
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| /dports/science/R-cran-kernlab/kernlab/R/ |
| H A D | lssvm.R | 189 alphaindex(ret) <- 1:m
202 alphaindex(ret) <- rep[1:dim(G)[2]]
211 svindex <- alphaindex(ret)
268 svindex <- alphaindex(ret)
380 alphaindex(ret) <- 1:m
389 svindex <- alphaindex(ret)
422 svindex <- alphaindex(ret)
557 alphaindex(ret) <- 1:m
578 svindex <- alphaindex(ret)
611 svindex <- alphaindex(ret)
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| H A D | ksvm.R | 339 svindex <- c(svindex,alphaindex(ret)[[p]])
427 svindex <- c(svindex,alphaindex(ret)[[p]])
522 svindex <- c(svindex,alphaindex(ret)[[p]])
586 names(alphaindex(ret)) <- lev(ret)
1124 svindex <- c(svindex,alphaindex(ret)[[p]])
1214 svindex <- c(svindex,alphaindex(ret)[[p]])
1367 names(alphaindex(ret)) <- lev(ret)
2150 names(alphaindex(ret)) <- lev(ret)
2717 …ewdata[,which(SVindex(object)%in%alphaindex(object)[[i]]), drop=FALSE] %*% A[alphaindex(object)[[i…
2719 …(kernelf(object),newdata,xmatrix(object)[alphaindex(object)[[i]]],A[alphaindex(object)[[i]]]) + su…
[all …]
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| H A D | aobjects.R | 216 alphaindex = "ANY", repr in ksvm
274 fun <- alphaindex
278 setMethod("alphaindex", "ksvm", function(object) object@alphaindex) method
281 x@alphaindex <- value
354 alphaindex = "ANY", repr in lssvm
389 x@alphaindex <- value
752 alphaindex="list", repr in gausspr
760 x@alphaindex <- value
1211 alphaindex = "vector", repr in kfa
1226 setMethod("alphaindex","kfa", function(object) object@alphaindex) method
[all …]
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| H A D | kfa.R | 117 alphaindex(obj) <- randomindex[idx]
118 xmatrix(obj) <- x[alphaindex(obj),]
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| H A D | gausspr.R | 229 alphaindex(ret)[[p]] <- c(indexes[[i]],indexes[[j]])
355 …ret <- kernelMult(kernelf(object),newdata,xmatrix(object)[alphaindex(object)[[p]],],alpha(object)[…
376 …b[,p] <- 1/(1+exp(-kernelMult(kernelf(object),newdata,xmatrix(object)[alphaindex(object)[[p]],],a…
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| /dports/science/R-cran-kernlab/kernlab/man/ |
| H A D | kfa-class.Rd | 5 \alias{alphaindex,kfa-method}
23 \item{\code{alphaindex}:}{Object of class \code{"vector"} containing
38 \item{alphaindex}{\code{signature(object = "kfa")}: returns the
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| H A D | ksvm-class.Rd | 5 \alias{alphaindex}
17 \alias{alphaindex,ksvm-method}
87 \item{\code{alphaindex}:}{Object of class \code{"list"} containing}
110 \item{alphaindex}{\code{signature(object = "ksvm")}: returns the
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| H A D | gausspr-class.Rd | 12 \alias{alphaindex,gausspr-method}
49 \item{\code{alphaindex}}{Object of class \code{"list"} containing
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| H A D | lssvm-class.Rd | 14 \alias{alphaindex,lssvm-method}
58 \item{\code{alphaindex}}{Object of class \code{"list"} containing
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| /dports/sysutils/bacula11-docs/bacula-docs-11.0.5/manuals/en/main/ |
| H A D | tapetesting.aux | 26 \setcounter{@alphaindex}{0}
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| H A D | projects.aux | 26 \setcounter{@alphaindex}{0}
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| H A D | bugs.aux | 31 \setcounter{@alphaindex}{0}
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| H A D | uis.aux | 33 \setcounter{@alphaindex}{0}
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| H A D | basejob.aux | 35 \setcounter{@alphaindex}{0}
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| /dports/sysutils/bacula11-docs/bacula-docs-11.0.5/manuals/en/main/www-main/main/ |
| H A D | projects.aux | 26 \setcounter{@alphaindex}{0}
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| H A D | tapetesting.aux | 26 \setcounter{@alphaindex}{0}
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| /dports/sysutils/bacula11-docs/bacula-docs-11.0.5/manuals/en/misc/ |
| H A D | bcoverpage.aux | 26 \setcounter{@alphaindex}{0}
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| /dports/science/R-cran-kernlab/kernlab/ |
| H A D | NAMESPACE | 55 "alphaindex",
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| /dports/sysutils/bacula11-docs/bacula-docs-11.0.5/manuals/en/developers/ |
| H A D | director.aux | 35 \setcounter{@alphaindex}{0}
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