Searched refs:altAllelesByPosition (Results 1 – 2 of 2) sorted by relevance
313 final Map<Integer, Allele> altAllelesByPosition = VariantContextTestUtils.streamVcf(output) local316 …Assert.assertTrue(altAllelesByPosition.get(10020042).basesMatch(Allele.ALT_C)); //tumor G->C, norm…317 …Assert.assertTrue(altAllelesByPosition.get(10020124).basesMatch(Allele.ALT_G)); //tumor A->G, norm…390 …final Map<Integer, List<Allele>> altAllelesByPosition = VariantContextTestUtils.streamVcf(unfilter… in testForceCalling() local393 final List<Allele> altAllelesAtThisLocus = altAllelesByPosition.get(vc.getStart()); in testForceCalling()
622 … final Map<Integer, List<Allele>> altAllelesByPosition = VariantContextTestUtils.streamVcf(output) in testForceCalling() local625 final List<Allele> altAllelesAtThisLocus = altAllelesByPosition.get(vc.getStart()); in testForceCalling()1031 … final Map<Integer, Allele> altAllelesByPosition = VariantContextTestUtils.streamVcf(outputVcf) in testMnpsAreRepresentedAsSingleEvents() local1041 Assert.assertEquals(altAllelesByPosition.get(position), entry.getValue()); in testMnpsAreRepresentedAsSingleEvents()