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Searched refs:ambig_cnt (Results 1 – 6 of 6) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dmakehmmerdb.c169 uint32_t seq_cnt, uint32_t ambig_cnt, uint32_t overlap, in buildAndWriteFMIndex() argument
325 if(fwrite(&ambig_cnt, sizeof(uint32_t), 1, fp) != 1) in buildAndWriteFMIndex()
415 uint32_t ambig_cnt; in main() local
694 ambig_cnt = meta->ambig_list->count - ambig_offset; in main()
698 …buildAndWriteFMIndex(meta, seq_offset, ambig_offset, seq_cnt, ambig_cnt, (uint32_t)block->list[0].… in main()
704 buildAndWriteFMIndex(meta, seq_offset, ambig_offset, seq_cnt, ambig_cnt, 0, fm_data, in main()
788 if(fread(&ambig_cnt, sizeof(ambig_cnt), 1, fptmp) != 1) in main()
825 if(fwrite(&ambig_cnt, sizeof(ambig_cnt), 1, fp) != 1) in main()
H A Dfm_general.c285 int hi = lo + fm->ambig_cnt - 1; in fm_findOverlappingAmbiguityBlock()
350 …while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+… in fm_convertRange2DSQ()
523 if(fread(&(fm->ambig_cnt), sizeof(uint32_t), 1, meta->fp) != 1) in fm_FM_read()
H A Dhmmer.h928 uint32_t ambig_cnt; member
/dports/biology/hmmer/hmmer-3.3/src/
H A Dmakehmmerdb.c169 uint32_t seq_cnt, uint32_t ambig_cnt, uint32_t overlap, in buildAndWriteFMIndex() argument
325 if(fwrite(&ambig_cnt, sizeof(uint32_t), 1, fp) != 1) in buildAndWriteFMIndex()
415 uint32_t ambig_cnt; in main() local
694 ambig_cnt = meta->ambig_list->count - ambig_offset; in main()
698 …buildAndWriteFMIndex(meta, seq_offset, ambig_offset, seq_cnt, ambig_cnt, (uint32_t)block->list[0].… in main()
704 buildAndWriteFMIndex(meta, seq_offset, ambig_offset, seq_cnt, ambig_cnt, 0, fm_data, in main()
788 if(fread(&ambig_cnt, sizeof(ambig_cnt), 1, fptmp) != 1) in main()
825 if(fwrite(&ambig_cnt, sizeof(ambig_cnt), 1, fp) != 1) in main()
H A Dfm_general.c285 int hi = lo + fm->ambig_cnt - 1; in fm_findOverlappingAmbiguityBlock()
350 …while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+… in fm_convertRange2DSQ()
523 if(fread(&(fm->ambig_cnt), sizeof(uint32_t), 1, meta->fp) != 1) in fm_FM_read()
H A Dhmmer.h928 uint32_t ambig_cnt; member