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Searched refs:annotationNames (Results 1 – 25 of 27) sorted by relevance

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/dports/biology/figtree/figtree-1.4.4/src/figtree/treeviewer/painters/
H A DStatesPainter.java42 public StatesPainter(String[] annotationNames, DiscreteColourDecorator[] decorators) { in StatesPainter() argument
45 this.annotationNames = annotationNames; in StatesPainter()
52 int siteCount = annotationNames.length; in calibrate()
83 for (String name: annotationNames) { in paint()
115 for (String name: annotationNames) { in paint()
144 private String[] annotationNames = null; field in StatesPainter
/dports/www/zend-framework/ZendFramework-2.4.13/library/Zend/Code/Annotation/Parser/
H A DGenericAnnotationParser.php34 protected $annotationNames = array(); variable in Zend\\Code\\Annotation\\Parser\\GenericAnnotationParser
67 $index = array_search($class, $this->annotationNames);
105 if (in_array($class, $this->annotationNames)) {
113 $this->annotationNames[] = $class;
148 if (in_array($class, $this->annotationNames)) {
169 if (!in_array($class, $this->annotationNames) && !$this->hasAlias($class)) {
/dports/www/phpbb3/phpBB3/vendor/zendframework/zend-code/src/Annotation/Parser/
H A DGenericAnnotationParser.php47 protected $annotationNames = []; variable in Zend\\Code\\Annotation\\Parser\\GenericAnnotationParser
80 $index = array_search($class, $this->annotationNames);
118 if (in_array($class, $this->annotationNames)) {
126 $this->annotationNames[] = $class;
161 if (in_array($class, $this->annotationNames)) {
182 if (! in_array($class, $this->annotationNames) && ! $this->hasAlias($class)) {
/dports/www/tikiwiki/tiki-21.2/vendor_bundled/vendor/laminas/laminas-code/src/Annotation/Parser/
H A DGenericAnnotationParser.php46 protected $annotationNames = []; variable in Laminas\\Code\\Annotation\\Parser\\GenericAnnotationParser
79 $index = array_search($class, $this->annotationNames);
117 if (in_array($class, $this->annotationNames)) {
125 $this->annotationNames[] = $class;
160 if (in_array($class, $this->annotationNames)) {
181 if (! in_array($class, $this->annotationNames) && ! $this->hasAlias($class)) {
/dports/biology/ugene/ugene-40.1/src/plugins/GUITestBase/src/tests/common_scenarios/annotations/
H A DGTTestsCreateAnnotationWidget.cpp711 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
744 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
767 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
813 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
860 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
897 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
933 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
970 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
996 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
1034 …CHECK_SET_ERR(5 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION()
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/utils/annotatedinterval/
H A DAnnotatedIntervalUtils.java108 … final SAMSequenceDictionary dictionary, final List<String> annotationNames, in mergeRegionsByAnnotation() argument
114 Utils.nonNull(annotationNames); in mergeRegionsByAnnotation()
127 …ll && isMergeByAnnotation(currentRegion, segmentsIterator.peek(), maxDistanceInBp, annotationNames) in mergeRegionsByAnnotation()
139 …nterval1, final AnnotatedInterval interval2, int maxDistance, final List<String> annotationNames) { in isMergeByAnnotation() argument
144 …(annotationNames.stream().allMatch(a -> interval1.getAnnotationValue(a).equals(interval2.getAnnota… in isMergeByAnnotation()
/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/jdk.jfr/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/jdk.jfr/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/jdk.jfr/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/jdk.jfr/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/jdk.jfr/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/classes/jdk/jfr/
H A DAnnotationElement.java73 private final List<String> annotationNames; field in AnnotationElement
111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement()
320 for (String n : annotationNames) { in getValue()
344 for (String n : annotationNames) { in hasValue()
/dports/biology/figtree/figtree-1.4.4/src/figtree/treeviewer/annotations/
H A DSelectAnnotationDialog.java49 public int showDialog(List<String> annotationNames) { in showDialog() argument
53 annotationCombo = new JComboBox(annotationNames.toArray()); in showDialog()
/dports/biology/ugene/ugene-40.1/src/plugins/repeat_finder/src/
H A DFindRepeatsDialog.cpp133 QStringList annotationNames = getAvailableAnnotationNames(); in FindRepeatsDialog() local
134 bool haveAnnotations = !annotationNames.isEmpty(); in FindRepeatsDialog()
139 prepareAMenu(annotationFitButton, annotationFitEdit, annotationNames); in FindRepeatsDialog()
140 prepareAMenu(annotationAroundKeepButton, annotationAroundKeepEdit, annotationNames); in FindRepeatsDialog()
141 prepareAMenu(annotationAroundFilterButton, annotationAroundFilterEdit, annotationNames); in FindRepeatsDialog()
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/copynumber/utils/annotatedinterval/
H A DAnnotatedIntervalUtilsUnitTest.java239 …ic void testMergeByAnnotation(List<AnnotatedInterval> initialRegions, List<String> annotationNames, in testMergeByAnnotation() argument
243 annotationNames, t -> {}, "__", maxDistanceInBp); in testMergeByAnnotation()
/dports/biology/figtree/figtree-1.4.4/src/figtree/application/
H A DFigTreeFrame.java490 List<String> annotationNames = new ArrayList<String>(); in annotateNodesFromTips() local
491 annotationNames.add("Colour"); in annotateNodesFromTips()
492 annotationNames.addAll(treeViewer.getAnnotationDefinitions().keySet()); in annotateNodesFromTips()
493 annotationNames.add("Name"); in annotateNodesFromTips()
499 int result = selectAnnotationDialog.showDialog(annotationNames); in annotateNodesFromTips()
514 List<String> annotationNames = new ArrayList<String>(); in annotateTipsFromNodes() local
515 annotationNames.add("Colour"); in annotateTipsFromNodes()
516 annotationNames.addAll(treeViewer.getAnnotationDefinitions().keySet()); in annotateTipsFromNodes()
522 if (selectAnnotationDialog.showDialog(annotationNames) != JOptionPane.CANCEL_OPTION) { in annotateTipsFromNodes()
/dports/biology/ugene/ugene-40.1/src/plugins/dotplot/src/
H A DDotPlotTasks.cpp311 …lot"), TaskFlag_None), sequenceX(_sequenceX), sequenceY(_sequenceY), annotationNames(_annotationNa… in DotPlotFilterTask()
362 QStringList cursequenceAnnotationNames = annotationNames.values(currentIntersParam); in createSuperRegionsList()
H A DDotPlotTasks.h172 QMultiMap<FilterIntersectionParameter, QString> annotationNames; variable
/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.ui/org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/preferences/
H A DProblemSeveritiesConfigurationBlock.java1243 String[] annotationNames= dialog.getResult(); in openNullAnnotationsConfigurationDialog() local
1244 setValue(PREF_NULLABLE_ANNOTATION_NAME, annotationNames[0]); in openNullAnnotationsConfigurationDialog()
1245 setValue(PREF_NONNULL_ANNOTATION_NAME, annotationNames[1]); in openNullAnnotationsConfigurationDialog()
1246 setValue(PREF_NONNULL_BY_DEFAULT_ANNOTATION_NAME, annotationNames[2]); in openNullAnnotationsConfigurationDialog()
1247 setValue(PREF_NULLABLE_ANNOTATION_SECONDARY_NAMES, annotationNames[3]); in openNullAnnotationsConfigurationDialog()
1248 setValue(PREF_NONNULL_ANNOTATION_SECONDARY_NAMES, annotationNames[4]); in openNullAnnotationsConfigurationDialog()
1249 setValue(PREF_NONNULL_BY_DEFAULT_ANNOTATION_SECONDARY_NAMES, annotationNames[5]); in openNullAnnotationsConfigurationDialog()
1369 String[] annotationNames= { in updateNullAnnotationsSetting() local
1374 …String defaultNullAnnotationsValue= Arrays.equals(annotationNames, NULL_ANNOTATIONS_DEFAULTS) ? EN… in updateNullAnnotationsSetting()
/dports/mail/archiveopteryx-devel/aox-96ab17e/message/
H A Dinjector.cpp113 EStringList annotationNames; member in InjectorData
612 d->annotationNames.append( a->entryName() ); in findDependencies()
621 d->annotationNames.removeDuplicates( true ); in findDependencies()
694 if ( !d->annotationNames.isEmpty() ) { in createDependencies()
696 new AnnotationNameCreator( d->annotationNames, d->transaction ); in createDependencies()
/dports/mail/archiveopteryx/archiveopteryx-3.2.0/message/
H A Dinjector.cpp113 EStringList annotationNames; member in InjectorData
614 d->annotationNames.append( a->entryName() ); in findDependencies()
623 d->annotationNames.removeDuplicates( true ); in findDependencies()
696 if ( !d->annotationNames.isEmpty() ) { in createDependencies()
698 new AnnotationNameCreator( d->annotationNames, d->transaction ); in createDependencies()
/dports/java/eclipse-ecj/eclipse-ecj-4.4.2_1/org/eclipse/jdt/internal/compiler/batch/
H A DMain.java3696 String annotationNames = Util.EMPTY_STRING;
3701 annotationNames = token.substring(start+1, end).trim();
3702 int separator1 = annotationNames.indexOf('|');
3704 nullableAnnotName = annotationNames.substring(0, separator1).trim();
3706 int separator2 = annotationNames.indexOf('|', separator1 + 1);
3708 nonNullAnnotName = annotationNames.substring(separator1 + 1, separator2).trim();
3710 nonNullByDefaultAnnotName = annotationNames.substring(separator2 + 1).trim();
/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.core/org.eclipse.jdt.core/batch/org/eclipse/jdt/internal/compiler/batch/
H A DMain.java4229 String annotationNames = Util.EMPTY_STRING;
4235 annotationNames = token.substring(start+1, end).trim();
4236 int separator1 = annotationNames.indexOf('|');
4238 nullableAnnotName = annotationNames.substring(0, separator1).trim();
4240 int separator2 = annotationNames.indexOf('|', separator1 + 1);
4242 nonNullAnnotName = annotationNames.substring(separator1 + 1, separator2).trim();
4244 nonNullByDefaultAnnotName = annotationNames.substring(separator2 + 1).trim();
/dports/java/eclipse-ecj/eclipse-ecj-4.4.2_1/org/eclipse/jdt/internal/compiler/problem/
H A DProblemReporter.java9580 char[][] annotationNames = (nullAnnotationTagBit == TagBits.AnnotationNonNull)
9583 …String[] args = new String[] { new String(annotationNames[annotationNames.length-1]), new String(t…

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