/dports/biology/figtree/figtree-1.4.4/src/figtree/treeviewer/painters/ |
H A D | StatesPainter.java | 42 public StatesPainter(String[] annotationNames, DiscreteColourDecorator[] decorators) { in StatesPainter() argument 45 this.annotationNames = annotationNames; in StatesPainter() 52 int siteCount = annotationNames.length; in calibrate() 83 for (String name: annotationNames) { in paint() 115 for (String name: annotationNames) { in paint() 144 private String[] annotationNames = null; field in StatesPainter
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/dports/www/zend-framework/ZendFramework-2.4.13/library/Zend/Code/Annotation/Parser/ |
H A D | GenericAnnotationParser.php | 34 protected $annotationNames = array(); variable in Zend\\Code\\Annotation\\Parser\\GenericAnnotationParser 67 $index = array_search($class, $this->annotationNames); 105 if (in_array($class, $this->annotationNames)) { 113 $this->annotationNames[] = $class; 148 if (in_array($class, $this->annotationNames)) { 169 if (!in_array($class, $this->annotationNames) && !$this->hasAlias($class)) {
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/dports/www/phpbb3/phpBB3/vendor/zendframework/zend-code/src/Annotation/Parser/ |
H A D | GenericAnnotationParser.php | 47 protected $annotationNames = []; variable in Zend\\Code\\Annotation\\Parser\\GenericAnnotationParser 80 $index = array_search($class, $this->annotationNames); 118 if (in_array($class, $this->annotationNames)) { 126 $this->annotationNames[] = $class; 161 if (in_array($class, $this->annotationNames)) { 182 if (! in_array($class, $this->annotationNames) && ! $this->hasAlias($class)) {
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/dports/www/tikiwiki/tiki-21.2/vendor_bundled/vendor/laminas/laminas-code/src/Annotation/Parser/ |
H A D | GenericAnnotationParser.php | 46 protected $annotationNames = []; variable in Laminas\\Code\\Annotation\\Parser\\GenericAnnotationParser 79 $index = array_search($class, $this->annotationNames); 117 if (in_array($class, $this->annotationNames)) { 125 $this->annotationNames[] = $class; 160 if (in_array($class, $this->annotationNames)) { 181 if (! in_array($class, $this->annotationNames) && ! $this->hasAlias($class)) {
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/dports/biology/ugene/ugene-40.1/src/plugins/GUITestBase/src/tests/common_scenarios/annotations/ |
H A D | GTTestsCreateAnnotationWidget.cpp | 711 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 744 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 767 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 813 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 860 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 897 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 933 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 970 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 996 …CHECK_SET_ERR(1 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() 1034 …CHECK_SET_ERR(5 == annotationNames.size(), QString("Unexpected annotations count: expect '%1', got… in GUI_TEST_CLASS_DEFINITION() [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/utils/annotatedinterval/ |
H A D | AnnotatedIntervalUtils.java | 108 … final SAMSequenceDictionary dictionary, final List<String> annotationNames, in mergeRegionsByAnnotation() argument 114 Utils.nonNull(annotationNames); in mergeRegionsByAnnotation() 127 …ll && isMergeByAnnotation(currentRegion, segmentsIterator.peek(), maxDistanceInBp, annotationNames) in mergeRegionsByAnnotation() 139 …nterval1, final AnnotatedInterval interval2, int maxDistance, final List<String> annotationNames) { in isMergeByAnnotation() argument 144 …(annotationNames.stream().allMatch(a -> interval1.getAnnotationValue(a).equals(interval2.getAnnota… in isMergeByAnnotation()
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/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/jdk.jfr/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/jdk.jfr/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/jdk.jfr/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/jdk.jfr/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/jdk.jfr/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/classes/jdk/jfr/ |
H A D | AnnotationElement.java | 73 private final List<String> annotationNames; field in AnnotationElement 111 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 214 this.annotationNames = Utils.smallUnmodifiable(n); in AnnotationElement() 320 for (String n : annotationNames) { in getValue() 344 for (String n : annotationNames) { in hasValue()
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/dports/biology/figtree/figtree-1.4.4/src/figtree/treeviewer/annotations/ |
H A D | SelectAnnotationDialog.java | 49 public int showDialog(List<String> annotationNames) { in showDialog() argument 53 annotationCombo = new JComboBox(annotationNames.toArray()); in showDialog()
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/dports/biology/ugene/ugene-40.1/src/plugins/repeat_finder/src/ |
H A D | FindRepeatsDialog.cpp | 133 QStringList annotationNames = getAvailableAnnotationNames(); in FindRepeatsDialog() local 134 bool haveAnnotations = !annotationNames.isEmpty(); in FindRepeatsDialog() 139 prepareAMenu(annotationFitButton, annotationFitEdit, annotationNames); in FindRepeatsDialog() 140 prepareAMenu(annotationAroundKeepButton, annotationAroundKeepEdit, annotationNames); in FindRepeatsDialog() 141 prepareAMenu(annotationAroundFilterButton, annotationAroundFilterEdit, annotationNames); in FindRepeatsDialog()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/copynumber/utils/annotatedinterval/ |
H A D | AnnotatedIntervalUtilsUnitTest.java | 239 …ic void testMergeByAnnotation(List<AnnotatedInterval> initialRegions, List<String> annotationNames, in testMergeByAnnotation() argument 243 annotationNames, t -> {}, "__", maxDistanceInBp); in testMergeByAnnotation()
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/dports/biology/figtree/figtree-1.4.4/src/figtree/application/ |
H A D | FigTreeFrame.java | 490 List<String> annotationNames = new ArrayList<String>(); in annotateNodesFromTips() local 491 annotationNames.add("Colour"); in annotateNodesFromTips() 492 annotationNames.addAll(treeViewer.getAnnotationDefinitions().keySet()); in annotateNodesFromTips() 493 annotationNames.add("Name"); in annotateNodesFromTips() 499 int result = selectAnnotationDialog.showDialog(annotationNames); in annotateNodesFromTips() 514 List<String> annotationNames = new ArrayList<String>(); in annotateTipsFromNodes() local 515 annotationNames.add("Colour"); in annotateTipsFromNodes() 516 annotationNames.addAll(treeViewer.getAnnotationDefinitions().keySet()); in annotateTipsFromNodes() 522 if (selectAnnotationDialog.showDialog(annotationNames) != JOptionPane.CANCEL_OPTION) { in annotateTipsFromNodes()
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/dports/biology/ugene/ugene-40.1/src/plugins/dotplot/src/ |
H A D | DotPlotTasks.cpp | 311 …lot"), TaskFlag_None), sequenceX(_sequenceX), sequenceY(_sequenceY), annotationNames(_annotationNa… in DotPlotFilterTask() 362 QStringList cursequenceAnnotationNames = annotationNames.values(currentIntersParam); in createSuperRegionsList()
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H A D | DotPlotTasks.h | 172 QMultiMap<FilterIntersectionParameter, QString> annotationNames; variable
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/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.ui/org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/preferences/ |
H A D | ProblemSeveritiesConfigurationBlock.java | 1243 String[] annotationNames= dialog.getResult(); in openNullAnnotationsConfigurationDialog() local 1244 setValue(PREF_NULLABLE_ANNOTATION_NAME, annotationNames[0]); in openNullAnnotationsConfigurationDialog() 1245 setValue(PREF_NONNULL_ANNOTATION_NAME, annotationNames[1]); in openNullAnnotationsConfigurationDialog() 1246 setValue(PREF_NONNULL_BY_DEFAULT_ANNOTATION_NAME, annotationNames[2]); in openNullAnnotationsConfigurationDialog() 1247 setValue(PREF_NULLABLE_ANNOTATION_SECONDARY_NAMES, annotationNames[3]); in openNullAnnotationsConfigurationDialog() 1248 setValue(PREF_NONNULL_ANNOTATION_SECONDARY_NAMES, annotationNames[4]); in openNullAnnotationsConfigurationDialog() 1249 setValue(PREF_NONNULL_BY_DEFAULT_ANNOTATION_SECONDARY_NAMES, annotationNames[5]); in openNullAnnotationsConfigurationDialog() 1369 String[] annotationNames= { in updateNullAnnotationsSetting() local 1374 …String defaultNullAnnotationsValue= Arrays.equals(annotationNames, NULL_ANNOTATIONS_DEFAULTS) ? EN… in updateNullAnnotationsSetting()
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/dports/mail/archiveopteryx-devel/aox-96ab17e/message/ |
H A D | injector.cpp | 113 EStringList annotationNames; member in InjectorData 612 d->annotationNames.append( a->entryName() ); in findDependencies() 621 d->annotationNames.removeDuplicates( true ); in findDependencies() 694 if ( !d->annotationNames.isEmpty() ) { in createDependencies() 696 new AnnotationNameCreator( d->annotationNames, d->transaction ); in createDependencies()
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/dports/mail/archiveopteryx/archiveopteryx-3.2.0/message/ |
H A D | injector.cpp | 113 EStringList annotationNames; member in InjectorData 614 d->annotationNames.append( a->entryName() ); in findDependencies() 623 d->annotationNames.removeDuplicates( true ); in findDependencies() 696 if ( !d->annotationNames.isEmpty() ) { in createDependencies() 698 new AnnotationNameCreator( d->annotationNames, d->transaction ); in createDependencies()
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/dports/java/eclipse-ecj/eclipse-ecj-4.4.2_1/org/eclipse/jdt/internal/compiler/batch/ |
H A D | Main.java | 3696 String annotationNames = Util.EMPTY_STRING; 3701 annotationNames = token.substring(start+1, end).trim(); 3702 int separator1 = annotationNames.indexOf('|'); 3704 nullableAnnotName = annotationNames.substring(0, separator1).trim(); 3706 int separator2 = annotationNames.indexOf('|', separator1 + 1); 3708 nonNullAnnotName = annotationNames.substring(separator1 + 1, separator2).trim(); 3710 nonNullByDefaultAnnotName = annotationNames.substring(separator2 + 1).trim();
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/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.core/org.eclipse.jdt.core/batch/org/eclipse/jdt/internal/compiler/batch/ |
H A D | Main.java | 4229 String annotationNames = Util.EMPTY_STRING; 4235 annotationNames = token.substring(start+1, end).trim(); 4236 int separator1 = annotationNames.indexOf('|'); 4238 nullableAnnotName = annotationNames.substring(0, separator1).trim(); 4240 int separator2 = annotationNames.indexOf('|', separator1 + 1); 4242 nonNullAnnotName = annotationNames.substring(separator1 + 1, separator2).trim(); 4244 nonNullByDefaultAnnotName = annotationNames.substring(separator2 + 1).trim();
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/dports/java/eclipse-ecj/eclipse-ecj-4.4.2_1/org/eclipse/jdt/internal/compiler/problem/ |
H A D | ProblemReporter.java | 9580 char[][] annotationNames = (nullAnnotationTagBit == TagBits.AnnotationNonNull) 9583 …String[] args = new String[] { new String(annotationNames[annotationNames.length-1]), new String(t…
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