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Searched refs:atom_ids (Results 1 – 25 of 57) sorted by relevance

123

/dports/textproc/regex2dfa/regex2dfa-0.1.6/third_party/re2/re2/testing/
H A Dfiltered_re2_test.cc223 vector<int> atom_ids; in TEST() local
225 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
244 vector<int> atom_ids; in TEST() local
247 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
249 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
257 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
258 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
267 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
268 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
269 for (int i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/net/ooni-mini/probe-engine-0.23.0/vendor/github.com/ooni/psiphon/oopsi/github.com/redjack/marionette/third_party/re2/re2/testing/
H A Dfiltered_re2_test.cc223 vector<int> atom_ids; in TEST() local
225 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
244 vector<int> atom_ids; in TEST() local
247 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
249 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
257 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
258 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
267 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
268 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
269 for (int i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/net/ooni-probe-cli/probe-cli-3.10.1/vendor/github.com/ooni/psiphon/oopsi/github.com/redjack/marionette/third_party/re2/re2/testing/
H A Dfiltered_re2_test.cc223 vector<int> atom_ids; in TEST() local
225 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
244 vector<int> atom_ids; in TEST() local
247 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
249 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
257 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
258 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
267 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
268 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
269 for (int i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/re2/src/re2/testing/
H A Dfiltered_re2_test.cc230 std::vector<int> atom_ids; in TEST() local
232 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
249 std::vector<int> atom_ids; in TEST() local
252 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
254 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
262 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
263 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
272 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
273 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
274 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/textproc/kibana6/kibana-6.8.16-darwin-x86_64/node_modules/re2/vendor/re2/testing/
H A Dfiltered_re2_test.cc230 std::vector<int> atom_ids; in TEST() local
232 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
249 std::vector<int> atom_ids; in TEST() local
252 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
254 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
262 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
263 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
272 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
273 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
274 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/math/clingo/clingo-5.5.1/examples/c/
H A Dbackend.c102 clingo_atom_t atom_ids[4]; in main() local
135 atom_ids[offset++] = lit; in main()
145 if (!clingo_backend_add_atom(backend, NULL, &atom_ids[3])) { goto error; } in main()
148 body[0] = atom_ids[0]; in main()
149 body[1] = atom_ids[1]; in main()
150 …if (!clingo_backend_rule(backend, false, &atom_ids[3], 1, body, sizeof(body)/sizeof(*body))) { got… in main()
153 body[0] = -(clingo_literal_t)atom_ids[3]; in main()
154 body[1] = atom_ids[2]; in main()
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/re2/src/re2/testing/
H A Dfiltered_re2_test.cc231 std::vector<int> atom_ids; in TEST() local
233 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
250 std::vector<int> atom_ids; in TEST() local
253 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
255 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
263 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
264 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
273 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
274 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
275 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/games/warzone2100/warzone2100/3rdparty/re2/re2/testing/
H A Dfiltered_re2_test.cc231 std::vector<int> atom_ids; in TEST() local
233 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
250 std::vector<int> atom_ids; in TEST() local
253 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
255 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
263 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
264 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
273 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
274 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
275 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/devel/re2/re2-2021-11-01/re2/testing/
H A Dfiltered_re2_test.cc231 std::vector<int> atom_ids; in TEST() local
233 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
250 std::vector<int> atom_ids; in TEST() local
253 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
255 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
263 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
264 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
273 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
274 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
275 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/textproc/kibana7/kibana-7.16.2-darwin-x86_64/node_modules/re2/vendor/re2/testing/
H A Dfiltered_re2_test.cc231 std::vector<int> atom_ids; in TEST() local
233 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
250 std::vector<int> atom_ids; in TEST() local
253 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
255 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
263 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
264 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
273 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
274 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
275 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/textproc/opensearch-dashboards/opensearch-dashboards-1.2.0-linux-x64/node_modules/re2/vendor/re2/testing/
H A Dfiltered_re2_test.cc231 std::vector<int> atom_ids; in TEST() local
233 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
250 std::vector<int> atom_ids; in TEST() local
253 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
255 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
263 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
264 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
273 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
274 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
275 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/devel/py-grpcio/grpcio-1.43.0/third_party/re2/re2/testing/
H A Dfiltered_re2_test.cc231 std::vector<int> atom_ids; in TEST() local
233 EXPECT_EQ(0, v.f.FirstMatch(text, atom_ids)); in TEST()
250 std::vector<int> atom_ids; in TEST() local
253 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
255 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
263 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
264 v.f.AllMatches(text, atom_ids, &matching_regexps); in TEST()
273 FindAtomIndices(v.atoms, atoms, &atom_ids); in TEST()
274 LOG(INFO) << "S: " << atom_ids.size(); in TEST()
275 for (size_t i = 0; i < atom_ids.size(); i++) in TEST()
[all …]
/dports/science/py-moltemplate/moltemplate-2.19.14/moltemplate/
H A Dremove_duplicates_nbody.py47 atom_ids = tuple(tokens[2:2 + n])
48 if atom_ids in atom_ids_in_use:
51 atom_ids_in_use.add(atom_ids)
/dports/science/lammps/lammps-stable_29Sep2021/lib/colvars/
H A Dcolvarcomp_protein.cpp198 void colvar::alpha_angles::collect_gradients(std::vector<int> const &atom_ids, std::vector<cvm::rve… in collect_gradients() argument
220 size_t a = std::lower_bound(atom_ids.begin(), atom_ids.end(), in collect_gradients()
221 ag[k].id) - atom_ids.begin(); in collect_gradients()
240 size_t a = std::lower_bound(atom_ids.begin(), atom_ids.end(), in collect_gradients()
241 ag[k].id) - atom_ids.begin(); in collect_gradients()
469 void colvar::dihedPC::collect_gradients(std::vector<int> const &atom_ids, std::vector<cvm::rvector>… in collect_gradients() argument
483 size_t a = std::lower_bound(atom_ids.begin(), atom_ids.end(), in collect_gradients()
484 ag[k].id) - atom_ids.begin(); in collect_gradients()
H A Dcolvarcomp.cpp417 void colvar::cvc::collect_gradients(std::vector<int> const &atom_ids, std::vector<cvm::rvector> &at… in collect_gradients() argument
433 size_t a = std::lower_bound(atom_ids.begin(), atom_ids.end(), in collect_gradients()
434 ag[k].id) - atom_ids.begin(); in collect_gradients()
441 size_t a = std::lower_bound(atom_ids.begin(), atom_ids.end(), in collect_gradients()
442 ag[k].id) - atom_ids.begin(); in collect_gradients()
449 size_t a = std::lower_bound(atom_ids.begin(), atom_ids.end(), in collect_gradients()
450 fg[k].id) - atom_ids.begin(); in collect_gradients()
/dports/science/py-pyscf/pyscf-2.0.1/pyscf/symm/
H A Dbasis.py82 for atom_ids in eql_atom_ids:
83 r0 = atom_coords[atom_ids[0]]
86 coords0 = atom_coords[atom_ids]
91 b0, b1 = aoslice[atom_ids[0],:2]
496 for atom_ids in eql_atom_ids:
497 if len(atom_ids) == 2:
498 at0 = atom_ids[0]
499 at1 = atom_ids[1]
552 elif len(atom_ids) == 1:
553 at0 = atom_ids[0]
[all …]
/dports/science/py-MDAnalysis/MDAnalysis-0.19.2/MDAnalysis/topology/
H A DLAMMPSParser.py475 atom_ids = np.zeros(n_atoms, dtype=np.int32)
490 atom_ids[i] = line[sd['id']]
502 order = np.argsort(atom_ids)
503 atom_ids = atom_ids[order]
527 attrs.append(Atomids(atom_ids))
/dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/lib/colvars/
H A Dcolvar.cpp417 atom_ids = std::vector<int> (temp_id_list.begin(), temp_id_list.end()); in build_atom_list()
420 atomic_gradients.resize (atom_ids.size()); in build_atom_list()
421 if (atom_ids.size()) { in build_atom_list()
423 cvm::log ("Colvar: created atom list with " + cvm::to_str(atom_ids.size()) + " atoms.\n"); in build_atom_list()
611 if (atom_ids.size() == 0) { in enable()
812 int a = std::lower_bound (atom_ids.begin(), atom_ids.end(), in calc()
813 cvcs[i]->atom_groups[j]->at(k).id) - atom_ids.begin(); in calc()
821 int a = std::lower_bound (atom_ids.begin(), atom_ids.end(), in calc()
822 cvcs[i]->atom_groups[j]->at(k).id) - atom_ids.begin(); in calc()
/dports/science/py-kliff/kliff-0.3.0/kliff/descriptors/symmetry_function/
H A Dsym_fn.py165 atom_ids = np.concatenate((neigh_indices, [i]))
170 for ii, idx in enumerate(atom_ids):
177 for ii, idx in enumerate(atom_ids):
/dports/textproc/regex2dfa/regex2dfa-0.1.6/third_party/re2/re2/
H A Dprefilter_tree.h89 void PropagateMatch(const vector<int>& atom_ids,
H A Dprefilter_tree.cc310 void PrefilterTree::PropagateMatch(const vector<int>& atom_ids, in PropagateMatch() argument
314 for (int i = 0; i < atom_ids.size(); i++) in PropagateMatch()
315 work.set(atom_ids[i], 1); in PropagateMatch()
/dports/net/ooni-probe-cli/probe-cli-3.10.1/vendor/github.com/ooni/psiphon/oopsi/github.com/redjack/marionette/third_party/re2/re2/
H A Dprefilter_tree.h89 void PropagateMatch(const vector<int>& atom_ids,
/dports/net/ooni-mini/probe-engine-0.23.0/vendor/github.com/ooni/psiphon/oopsi/github.com/redjack/marionette/third_party/re2/re2/
H A Dprefilter_tree.h89 void PropagateMatch(const vector<int>& atom_ids,
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/re2/src/re2/
H A Dprefilter_tree.cc326 void PrefilterTree::PropagateMatch(const std::vector<int>& atom_ids, in PropagateMatch() argument
330 for (size_t i = 0; i < atom_ids.size(); i++) in PropagateMatch()
331 work.set(atom_ids[i], 1); in PropagateMatch()
/dports/games/warzone2100/warzone2100/3rdparty/re2/re2/
H A Dprefilter_tree.cc326 void PrefilterTree::PropagateMatch(const std::vector<int>& atom_ids, in PropagateMatch() argument
330 for (size_t i = 0; i < atom_ids.size(); i++) in PropagateMatch()
331 work.set(atom_ids[i], 1); in PropagateMatch()

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