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/dports/graphics/R-cran-pROC/pROC/tests/testthat/
H A Dtest-auc.R7 expect_equal(as.numeric(auc(r.wfns)), 0.823678861788618)
10 expect_equal(as.numeric(auc(r.ndka)), 0.611957994579946)
160 expect_equal(as.numeric(auc(aSAH$outcome, aSAH$wfns)), as.numeric(auc(r.wfns)))
161 expect_equal(as.numeric(auc(aSAH$outcome, aSAH$ndka)), as.numeric(auc(r.ndka)))
163 expect_equal(as.numeric(auc(outcome ~ wfns, aSAH)), as.numeric(auc(r.wfns)))
164 expect_equal(as.numeric(auc(outcome ~ ndka, aSAH)), as.numeric(auc(r.ndka)))
168 …expect_equal(as.numeric(auc(aSAH$outcome, aSAH$wfns, percent = TRUE)), as.numeric(auc(r.wfns.perce…
169 …expect_equal(as.numeric(auc(aSAH$outcome, aSAH$ndka, percent = TRUE)), as.numeric(auc(r.ndka.perce…
171 …expect_equal(as.numeric(auc(outcome ~ wfns, aSAH, percent = TRUE)), as.numeric(auc(r.wfns.percent)…
172 …expect_equal(as.numeric(auc(outcome ~ ndka, aSAH, percent = TRUE)), as.numeric(auc(r.ndka.percent)…
[all …]
H A Dtest-cov.R19 expect_equal(cov(auc(r.wfns), auc(r.ndka)), -0.000532967856762438)
35 expect_equal(cov(auc(r.s100b.percent), auc(r.wfns.percent)), 11.9615567376754)
42 expect_equal(cov(auc(r.s100b.percent), auc(r.wfns.percent), method = "obuchowski"), 8.560803)
50 expect_warning(cov(auc(r.wfns), r.ndka.percent))
51 expect_warning(cov(r.wfns, auc(r.ndka.percent)))
52 expect_warning(cov(r.wfns, auc(r.ndka.percent)))
65 expect_equal(cov(auc(r1), auc(r2)), -7.56164938056579)
66 expect_equal(cov(auc(r1), r2), -7.56164938056579)
67 expect_equal(cov(r1, auc(r2)), -7.56164938056579)
85 …for (roc1 in list(r.s100b, auc(r.s100b), smooth(r.s100b), r.s100b.partial2, r.s100b.partial2$auc))…
[all …]
H A Dtest-multiclass.R12 expect_false(attributes(uv.mr$auc)$partial.auc)
13 expect_false(attributes(uv.mr$auc)$percent)
29 uv.ma <- auc(uv.mr)
33 expect_true(attributes(uv.mr$auc)$percent)
42 uv.ma <- auc(uv.mr, partial.auc=pauc.spec)
93 expect_equal(as.numeric(auc(mv.mr)), 1)
129 expect_equal(as.numeric(auc(mv.mr.f)), as.numeric(auc(mv.mr)))
132 expect_equal(as.numeric(auc(mv.mr)), as.numeric(auc(mv.mr)))
182 expect_equal(as.numeric(mv.mr$auc), .1)
183 expect_equal(as.numeric(auc(mv.mr)), 1)
[all …]
H A Dtest-power.roc.test.R8 expect_equal(as.numeric(res$auc), as.numeric(r.s100b$auc))
17 expect_equal(as.numeric(res$auc), as.numeric(r.s100b$auc))
26 expect_equal(as.numeric(res$auc), 0.73)
35 res <- power.roc.test(ncases=41, ncontrols=72, auc=0.73)
41 res <- power.roc.test(auc=r.s100b$auc, sig.level=0.05, power=0.95, kappa=1.7)
42 expect_equal(as.numeric(res$auc), as.numeric(r.s100b$auc))
51 expect_equal(as.numeric(res$auc), 0.73)
71 expect_equal(as.numeric(res$auc1), as.numeric(r.ndka$auc))
72 expect_equal(as.numeric(res$auc2), as.numeric(r.wfns$auc))
83 expect_equal(as.numeric(res$auc1), as.numeric(r.ndka$auc))
[all …]
H A Dtest-numeric-accuracy.R16 expect_equal(as.numeric(auc(r1)), as.numeric(auc(r2)))
17 expect_equal(as.numeric(auc(r1)), as.numeric(auc(r3)))
24 expect_equal(as.numeric(auc(r1)), as.numeric(auc(r2)))
25 expect_equal(as.numeric(auc(r1)), as.numeric(auc(r3)))
32 expect_equal(pROC:::delongPlacements(r1)$theta, as.numeric(auc(r1)))
33 expect_equal(pROC:::delongPlacements(r2)$theta, as.numeric(auc(r2)))
34 expect_equal(pROC:::delongPlacements(r3)$theta, as.numeric(auc(r3)))
41 expect_equal(pROC:::delongPlacements(r1)$theta, as.numeric(auc(r1)))
42 expect_equal(pROC:::delongPlacements(r2)$theta, as.numeric(auc(r2)))
43 expect_equal(pROC:::delongPlacements(r3)$theta, as.numeric(auc(r3)))
H A Dtest-var.R13 expect_equal(var(auc(r.wfns)), 0.00146991470882363)
14 expect_equal(var(auc(r.ndka)), 0.0031908105493913)
15 expect_equal(var(auc(r.s100b)), 0.00266868245717244)
27 expect_equal(var(auc(r.wfns.percent)), 14.6991470882363)
28 expect_equal(var(auc(r.ndka.percent)), 31.908105493913)
29 expect_equal(var(auc(r.s100b.percent)), 26.6868245717244)
43 …for (roc1 in list(r.s100b, auc(r.s100b), smooth(r.s100b), r.s100b.partial1, r.s100b.partial1$auc))…
/dports/graphics/R-cran-pROC/pROC/R/
H A Dauc.R20 auc <- function(...) { function
35 roc(response, predictor, auc = TRUE, ...)$auc
39 roc.default(response, predictor, auc=TRUE, ...)$auc
53 auc <- as.vector(auc) # remove potential pre-existing attributes
65 return(auc)
75 auc <- as.vector(auc) # remove potential pre-existing attributes
86 return(auc)
188 auc <- auc/100
197 auc <- NA
215 class(auc) <- c("auc", class(auc))
[all …]
H A Dcov.R33 roc1$auc <- auc1
54 roc2$auc <- auc2
90 if (is.null(roc1$auc) | !reuse.auc) {
92 roc1$auc <- auc(smooth.roc=do.call("smooth.roc", c(list(roc=roc1), smoothing.args$roc1)), ...)
102 roc1$auc <- auc(roc1, ...)
104 if (is.null(roc2$auc) | !reuse.auc) {
106 roc2$auc <- auc(smooth.roc=do.call("smooth.roc", c(list(roc=roc2), smoothing.args$roc2)), ...)
116 roc2$auc <- auc(roc2, ...)
120 …if (!identical(attributes(roc1$auc)[names(attributes(roc1$auc))!="roc"], attributes(roc2$auc)[name…
162 if ((has.partial.auc(roc1) && attr(roc1$auc, "partial.auc.focus") == "sensitivity")
[all …]
H A Dci.auc.R47 ci.auc.auc <- function(auc, ...) { argument
48 roc <- attr(auc, "roc")
49 roc$auc <- auc
70 if (is.null(smooth.roc$auc) | !reuse.auc)
71 smooth.roc$auc <- auc(smooth.roc, ...)
85 oldauc <- smooth.roc$auc
89 attr(smooth.roc$auc, "partial.auc") <- attr(smooth.roc$auc, "partial.auc") / 100
95 auc.args <- attributes(smooth.roc$auc)[grep("partial.auc", names(attributes(smooth.roc$auc)))]
147 if (is.null(roc$auc) | !reuse.auc)
148 roc$auc <- auc(roc, ...)
[all …]
H A Dpower.roc.test.R35 roc1$auc <- auc(roc1, ...)
51 roc2$auc <- auc(roc2, ...)
71 …if (!identical(attributes(roc1$auc)[names(attributes(roc1$auc))!="roc"], attributes(roc2$auc)[name…
121 auc <- auc(roc1) functionVar
152 if (is.null(auc)) {
167 auc <- root$root
176 else if (is.null(auc))
196 else if (is.null(auc))
354 delta <- roc1$auc - roc2$auc
383 delta <- roc1$auc - roc2$auc
[all …]
H A Droc.test.R94 roc1$auc <- auc1
128 roc2$auc <- auc2
188 roc1$auc <- auc(smooth.roc=do.call("smooth.roc", c(list(roc=roc1), smoothing.args$roc1)), ...)
198 roc1$auc <- auc(roc1, ...)
202 roc2$auc <- auc(smooth.roc=do.call("smooth.roc", c(list(roc=roc2), smoothing.args$roc2)), ...)
212 roc2$auc <- auc(roc2, ...)
216 …if (!identical(attributes(roc1$auc)[names(attributes(roc1$auc))!="roc"], attributes(roc2$auc)[name…
280 estimate <- roc1$auc
284 estimate <- c(estimate, roc2$auc)
291 …"pAUC (", attr(roc1$auc, "partial.auc")[1], "-", attr(roc1$auc, "partial.auc")[2], " ", attr(roc1$…
[all …]
H A Dvar.R27 var.auc <- function(auc, ...) { argument
29 roc <- auc
30 attr(auc, "roc") <- NULL
32 roc$auc <- auc
50 if (is.null(roc$auc) | !reuse.auc)
51 roc$auc <- auc(roc, ...)
94 if (has.partial.auc(roc) && attr(roc$auc, "partial.auc.focus") == "sensitivity") {
130 auc.args <- attributes(roc$auc)[grep("partial.auc", names(attributes(roc$auc)))]
/dports/graphics/R-cran-pROC/pROC/man/
H A Dhas.partial.auc.Rd2 \name{has.partial.auc}
3 \alias{has.partial.auc}
5 \alias{has.partial.auc.auc}
6 \alias{has.partial.auc.roc}
15 has.partial.auc(roc)
16 \S3method{has.partial.auc}{auc}(roc)
32 \code{\link{auc}}
40 has.partial.auc(roc1)
41 has.partial.auc(auc(roc1))
46 has.partial.auc(roc2)
[all …]
H A Dci.auc.Rd2 \name{ci.auc}
3 \alias{ci.auc}
4 \alias{ci.auc.auc}
10 \alias{ci.auc.multiclass.auc}
30 \S3method{ci.auc}{auc}(auc, ...)
32 \S3method{ci.auc}{multiclass.auc}(multiclass.auc, ...)
33 \S3method{ci.auc}{auc}(auc, ...)
43 \item{auc}{an \dQuote{auc} object from the \code{\link{auc}} function.}
228 partial.auc=c(1, .8), partial.auc.focus="se", partial.auc.correct=TRUE,
232 partial.auc=c(1, .8), partial.auc.focus="se", partial.auc.correct=TRUE,
[all …]
H A Dauc.Rd2 \name{auc}
3 \alias{auc}
4 \alias{auc.default}
5 \alias{auc.formula}
6 \alias{auc.roc}
7 \alias{auc.smooth.roc}
22 auc(...)
23 \S3method{auc}{roc}(roc, partial.auc=FALSE, partial.auc.focus=c("specificity",
62 \code{auc.default}, \code{auc.formula}, \code{auc.smooth.roc}.
174 auc(roc.s100b)
[all …]
H A Dplot.roc.Rd55 print.auc=FALSE,
60 print.auc.col=col,
77 auc.polygon=FALSE,
113 plot (specifically \code{print.auc}, \code{auc.polygon} and
177 \item{print.auc.adj, print.auc.cex, print.auc.col}{the text
202 \item{auc.polygon.col, auc.polygon.lty, auc.polygon.density,
210 \item{max.auc.polygon.col, max.auc.polygon.lty, max.auc.polygon.density,
256 For \code{print.auc}, \code{auc.polygon} and \code{max.auc.polygon}
281 field and \code{reuse.auc=TRUE}, \link{auc} is not called and
323 plot(roc.s100b, print.auc=TRUE, auc.polygon=TRUE, partial.auc=c(1, 0.8),
[all …]
H A DgroupGeneric.Rd5 \alias{groupGeneric.auc}
11 \alias{Ops.auc}
12 \alias{Math.auc}
19 \alias{Ops.ci.auc}
20 \alias{Math.ci.auc}
29 …Redefine \pkg{base} groupGeneric functions to handle \code{\link{auc}} and \code{\link{ci}} object…
39 \item{x, e1, e2}{\code{\link{auc}} objects, or mixed numerics and \code{auc} objects.
47 \code{\link{groupGeneric}}, \code{\link{auc}}
53 aucobj1 <- auc(roc(aSAH$outcome, aSAH$s100b))
54 aucobj2 <- auc(roc(aSAH$outcome, aSAH$wfns))
H A Dprint.Rd7 \alias{print.ci.auc}
12 \alias{print.auc}
13 \alias{print.multiclass.auc}
29 \S3method{print}{auc}(x, digits=max(3, getOption("digits") - 3), ...)
31 \S3method{print}{ci.auc}(x, digits=max(3, getOption("digits") - 3), ...)
40 \item{x}{a roc, auc or ci object, from the \link{roc}, \link{auc} or
48 particular, \code{print.roc} calls \code{print.auc} and the
50 propagated. Not used in print.auc and print.ci variants.
59 \code{\link{roc}}, \code{\link{auc}}, \code{\link{ci}}, \code{\link{coords}}
74 # Print an auc and a ci object, from the ROC object or calling
[all …]
/dports/graphics/R-cran-pROC/pROC/
H A DNAMESPACE2 S3method("are.paired", "auc")
6 export(auc)
7 S3method("auc", "roc")
9 S3method("auc", "formula")
10 S3method("auc", "default")
19 S3method("ci", "auc")
47 export(ci.auc)
52 S3method("ci.auc", "auc")
54 S3method("ci.auc", "multiclass.auc")
64 S3method("cov", "auc")
[all …]
/dports/devel/R-cran-ModelMetrics/ModelMetrics/man/
H A Dauc.Rd3 \name{auc}
4 \alias{auc}
5 \alias{auc.default}
6 \alias{auc.glm}
7 \alias{auc.randomForest}
8 \alias{auc.glmerMod}
9 \alias{auc.gbm}
10 \alias{auc.rpart}
13 auc(...)
44 auc(testDF$y, Preds)
[all …]
/dports/misc/py-xgboost/xgboost-1.5.1/src/metric/
H A Dauc.cc48 float auc {0}; in BinaryAUC() local
74 auc = 0; in BinaryAUC()
151 float auc{0}; in GroupRankingAUC() local
171 auc /= sum_w; in GroupRankingAUC()
174 return auc; in GroupRankingAUC()
199 float auc; in RankingAUC() local
204 auc = 0; in RankingAUC()
208 sum_auc += auc; in RankingAUC()
226 float auc {0}; in Eval() local
303 auc = auc / local_area; in Eval()
[all …]
/dports/misc/xgboost/xgboost-1.5.1/src/metric/
H A Dauc.cc48 float auc {0}; in BinaryAUC() local
74 auc = 0; in BinaryAUC()
151 float auc{0}; in GroupRankingAUC() local
171 auc /= sum_w; in GroupRankingAUC()
174 return auc; in GroupRankingAUC()
199 float auc; in RankingAUC() local
204 auc = 0; in RankingAUC()
208 sum_auc += auc; in RankingAUC()
226 float auc {0}; in Eval() local
303 auc = auc / local_area; in Eval()
[all …]
/dports/lang/sdcc/sdcc-4.0.0/sim/ucsim/stm8.src/
H A Dtimercl.h103 cl_tim(class cl_uc *auc, int aid, t_addr abase);
133 cl_tim1(class cl_uc *auc, int aid, t_addr abase);
140 cl_tim1_saf(class cl_uc *auc, int aid, t_addr abase);
147 cl_tim1_all(class cl_uc *auc, int aid, t_addr abase);
156 cl_tim235(class cl_uc *auc, int aid, t_addr abase);
179 cl_tim2_all(class cl_uc *auc, int aid, t_addr abase);
194 cl_tim3_saf(class cl_uc *auc, int aid, t_addr abase);
202 cl_tim3_all(class cl_uc *auc, int aid, t_addr abase);
217 cl_tim5_saf(class cl_uc *auc, int aid, t_addr abase);
225 cl_tim5_all(class cl_uc *auc, int aid, t_addr abase);
[all …]
/dports/math/PDL/PDL-2.019/Lib/Filter/
H A DLinPred.pm106 my $auc = $this->{AutoCor};
135 .= $auc->slice(($n+$nl-1).":$n");
138 .= $auc->slice(($n+$nl-1).":$n");
195 my $auc = $this->{AutoCor};
197 print "AUTOCOR: $auc\n";
241 my ($auc,$auc1);
252 $auc -= $da ** 2;
258 $auc = $auc1;
263 $this->{AutoCor} = $auc;
269 $auc->slice("-1:1");
[all …]
/dports/misc/py-xgboost/xgboost-1.5.1/tests/cpp/metric/
H A Dtest_auc.cc25 float auc = metric->Eval({1, 1}, info, false); in TEST() local
26 ASSERT_TRUE(std::isnan(auc)); in TEST()
28 auc = metric->Eval(HostDeviceVector<float>{}, info, false); in TEST()
29 ASSERT_TRUE(std::isnan(auc)); in TEST()
85 float auc = GetMetricEval(metric, in TEST() local
92 EXPECT_TRUE(std::isnan(auc)) << auc; in TEST()
101 auc = GetMetricEval(metric, predts, labels, {1.0f, 2.0f, 3.0f, 4.0f}); in TEST()
102 ASSERT_GT(auc, 0.714); in TEST()

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