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Searched refs:aux_block (Results 1 – 24 of 24) sorted by relevance

/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dcram_encode.c867 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
870 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
873 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1023 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1367 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container()
1368 if (!s->aux_block) in cram_encode_container()
1380 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
H A Dcram_structs.h589 cram_block **aux_block; member
H A Dcram_io.c3379 if (s->aux_block) in cram_free_slice()
3380 free(s->aux_block); in cram_free_slice()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dcram_encode.c867 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
870 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
873 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1023 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1367 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container()
1368 if (!s->aux_block) in cram_encode_container()
1380 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
H A Dcram_structs.h589 cram_block **aux_block; member
H A Dcram_io.c3401 if (s->aux_block) in cram_free_slice()
3402 free(s->aux_block); in cram_free_slice()
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dcram_encode.c867 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
870 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
873 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1023 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1367 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container()
1368 if (!s->aux_block) in cram_encode_container()
1380 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
H A Dcram_structs.h591 cram_block **aux_block; member
H A Dcram_io.c3333 if (s->aux_block) in cram_free_slice()
3334 free(s->aux_block); in cram_free_slice()
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dcram_encode.c911 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
914 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
917 if (cram_compress_block(fd, s, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1057 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1420 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container()
1421 if (!s->aux_block) in cram_encode_container()
1433 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
H A Dcram_structs.h595 cram_block **aux_block; member
H A Dcram_io.c4094 if (s->aux_block) in cram_free_slice()
4095 free(s->aux_block); in cram_free_slice()
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dcram_encode.c870 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
873 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
876 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1026 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1371 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container()
1372 if (!s->aux_block) in cram_encode_container()
1384 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
H A Dcram_structs.h591 cram_block **aux_block; member
H A Dcram_io.c3335 if (s->aux_block) in cram_free_slice()
3336 free(s->aux_block); in cram_free_slice()
/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/
H A Dcram_encode.c938 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
941 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
944 if (cram_compress_block2(fd, s, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1150 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1540 s->aux_block = calloc(ntags*2, sizeof(*s->aux_block)); in cram_encode_container()
1541 if (!s->aux_block) in cram_encode_container()
1554 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
1557 s->aux_block[s->naux_block++] = tm->blk2; in cram_encode_container()
H A Dcram_structs.h653 cram_block **aux_block; member
H A Dcram_io.c4405 if (s->aux_block) in cram_free_slice()
4406 free(s->aux_block); in cram_free_slice()
/dports/biology/htslib/htslib-1.14/cram/
H A Dcram_encode.c938 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
941 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
944 if (cram_compress_block2(fd, s, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1150 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1540 s->aux_block = calloc(ntags*2, sizeof(*s->aux_block)); in cram_encode_container()
1541 if (!s->aux_block) in cram_encode_container()
1554 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
1557 s->aux_block[s->naux_block++] = tm->blk2; in cram_encode_container()
H A Dcram_structs.h653 cram_block **aux_block; member
H A Dcram_io.c4405 if (s->aux_block) in cram_free_slice()
4406 free(s->aux_block); in cram_free_slice()
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A Dcram_encode.c917 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice()
920 if (s->aux_block[i]->method != RAW) in cram_compress_slice()
923 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice()
1073 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice()
1441 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container()
1442 if (!s->aux_block) in cram_encode_container()
1455 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
H A Dcram_structs.h595 cram_block **aux_block; member
H A Dcram_io.c3713 if (s->aux_block) in cram_free_slice()
3714 free(s->aux_block); in cram_free_slice()