/dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
H A D | cram_encode.c | 867 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 870 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 873 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1023 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1367 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container() 1368 if (!s->aux_block) in cram_encode_container() 1380 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
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H A D | cram_structs.h | 589 cram_block **aux_block; member
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H A D | cram_io.c | 3379 if (s->aux_block) in cram_free_slice() 3380 free(s->aux_block); in cram_free_slice()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
H A D | cram_encode.c | 867 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 870 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 873 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1023 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1367 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container() 1368 if (!s->aux_block) in cram_encode_container() 1380 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
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H A D | cram_structs.h | 589 cram_block **aux_block; member
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H A D | cram_io.c | 3401 if (s->aux_block) in cram_free_slice() 3402 free(s->aux_block); in cram_free_slice()
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/dports/biology/stacks/stacks-2.4/htslib/cram/ |
H A D | cram_encode.c | 867 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 870 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 873 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1023 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1367 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container() 1368 if (!s->aux_block) in cram_encode_container() 1380 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
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H A D | cram_structs.h | 591 cram_block **aux_block; member
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H A D | cram_io.c | 3333 if (s->aux_block) in cram_free_slice() 3334 free(s->aux_block); in cram_free_slice()
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/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
H A D | cram_encode.c | 911 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 914 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 917 if (cram_compress_block(fd, s, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1057 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1420 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container() 1421 if (!s->aux_block) in cram_encode_container() 1433 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
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H A D | cram_structs.h | 595 cram_block **aux_block; member
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H A D | cram_io.c | 4094 if (s->aux_block) in cram_free_slice() 4095 free(s->aux_block); in cram_free_slice()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
H A D | cram_encode.c | 870 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 873 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 876 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1026 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1371 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container() 1372 if (!s->aux_block) in cram_encode_container() 1384 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
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H A D | cram_structs.h | 591 cram_block **aux_block; member
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H A D | cram_io.c | 3335 if (s->aux_block) in cram_free_slice() 3336 free(s->aux_block); in cram_free_slice()
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/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
H A D | cram_encode.c | 938 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 941 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 944 if (cram_compress_block2(fd, s, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1150 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1540 s->aux_block = calloc(ntags*2, sizeof(*s->aux_block)); in cram_encode_container() 1541 if (!s->aux_block) in cram_encode_container() 1554 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container() 1557 s->aux_block[s->naux_block++] = tm->blk2; in cram_encode_container()
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H A D | cram_structs.h | 653 cram_block **aux_block; member
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H A D | cram_io.c | 4405 if (s->aux_block) in cram_free_slice() 4406 free(s->aux_block); in cram_free_slice()
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/dports/biology/htslib/htslib-1.14/cram/ |
H A D | cram_encode.c | 938 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 941 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 944 if (cram_compress_block2(fd, s, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1150 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1540 s->aux_block = calloc(ntags*2, sizeof(*s->aux_block)); in cram_encode_container() 1541 if (!s->aux_block) in cram_encode_container() 1554 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container() 1557 s->aux_block[s->naux_block++] = tm->blk2; in cram_encode_container()
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H A D | cram_structs.h | 653 cram_block **aux_block; member
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H A D | cram_io.c | 4405 if (s->aux_block) in cram_free_slice() 4406 free(s->aux_block); in cram_free_slice()
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
H A D | cram_encode.c | 917 if (!s->aux_block[i] || s->aux_block[i] == s->block[0]) in cram_compress_slice() 920 if (s->aux_block[i]->method != RAW) in cram_compress_slice() 923 if (cram_compress_block(fd, s->aux_block[i], s->aux_block[i]->m, in cram_compress_slice() 1073 s->block[s->hdr->num_blocks++] = s->aux_block[n]; in cram_encode_slice() 1441 s->aux_block = calloc(ntags, sizeof(*s->aux_block)); in cram_encode_container() 1442 if (!s->aux_block) in cram_encode_container() 1455 s->aux_block[s->naux_block++] = tm->blk; in cram_encode_container()
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H A D | cram_structs.h | 595 cram_block **aux_block; member
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H A D | cram_io.c | 3713 if (s->aux_block) in cram_free_slice() 3714 free(s->aux_block); in cram_free_slice()
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