Searched refs:avgSeedQual (Results 1 – 5 of 5) sorted by relevance
466 float avgSeedQual = 0.0; in assignMappingQuality() local478 avgSeedQual+=q; in assignMappingQuality()480 avgSeedQual/=options.artSeedLength; in assignMappingQuality()483 if(avgSeedQual>14) qualTerm2 += (int)((maxSeedErrors-kPrime)*(avgSeedQual-14)); in assignMappingQuality()
494 float avgSeedQual = 0.0; in assignMappingQuality() local506 avgSeedQual+=q; in assignMappingQuality()508 avgSeedQual/=options.artSeedLength; in assignMappingQuality()511 if(avgSeedQual>14) qualTerm2 += (int)((maxSeedErrors-kPrime)*(avgSeedQual-14)); in assignMappingQuality()
472 float avgSeedQual = 0.0; in assignMappingQuality() local484 avgSeedQual+=q; in assignMappingQuality()486 avgSeedQual/=options.artSeedLength; in assignMappingQuality()489 if(avgSeedQual>14) qualTerm2 += (int)((maxSeedErrors-kPrime)*(avgSeedQual-14)); in assignMappingQuality()
539 float avgSeedQual = 0.0; in assignMappingQuality() local551 avgSeedQual+=q; in assignMappingQuality()553 avgSeedQual/=options.artSeedLength; in assignMappingQuality()556 if(avgSeedQual>14) qualTerm2 += (int)((maxSeedErrors-kPrime)*(avgSeedQual-14)); in assignMappingQuality()
541 float avgSeedQual = 0.0; in assignMappingQuality() local553 avgSeedQual+=q; in assignMappingQuality()555 avgSeedQual/=options.artSeedLength; in assignMappingQuality()558 if(avgSeedQual>14) qualTerm2 += (int)((maxSeedErrors-kPrime)*(avgSeedQual-14)); in assignMappingQuality()