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/dports/math/sdpa/sdpa-7.3.8/
H A Dsdpa_linear.cpp1161 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[j*bMat.nRow],&IONE, in multiply()
1163 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[i*bMat.nRow],&IONE, in multiply()
1166 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[j],&bMat.nRow, in multiply()
1168 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[i],&bMat.nRow, in multiply()
1173 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[j*bMat.nRow],&IONE, in multiply()
1176 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[j],&bMat.nRow, in multiply()
1194 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[j*bMat.nRow],&IONE, in multiply()
1196 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[i*bMat.nRow],&IONE, in multiply()
1199 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[j],&bMat.nRow, in multiply()
1201 daxpy_fc(&bMat.nCol,&value,&bMat.de_ele[i],&bMat.nRow, in multiply()
[all …]
H A Dsdpa_linear.h63 DenseMatrix& bMat);
66 DenseMatrix& bMat);
199 DenseMatrix& bMat);
204 SparseMatrix& bMat);
209 DenseMatrix& bMat);
233 DenseLinearSpace& bMat,
238 DenseLinearSpace& bMat,
243 SparseLinearSpace& bMat,
269 DenseLinearSpace& bMat);
274 DenseLinearSpace& bMat);
[all …]
H A Dsdpa_jordan.cpp221 DenseLinearSpace& bMat, in multiply() argument
277 DenseLinearSpace& bMat,
326 SparseLinearSpace& bMat,
374 DenseLinearSpace& bMat) in jordan_product() argument
376 multiply(retMat,aMat,bMat); in jordan_product()
384 DenseLinearSpace& bMat) in ns_jordan_product() argument
386 multiply(retMat,aMat,bMat); in ns_jordan_product()
393 DenseLinearSpace& bMat, in jordan_quadratic_product() argument
396 multiply(workMat,aMat,bMat); in jordan_quadratic_product()
404 DenseLinearSpace& bMat, in jordan_triple_product() argument
[all …]
H A Dsdpa_jordan.h61 DenseLinearSpace& bMat,
67 DenseLinearSpace& bMat,
72 SparseLinearSpace& bMat,
79 DenseLinearSpace& bMat);
83 DenseLinearSpace& bMat);
88 DenseLinearSpace& bMat,
94 DenseLinearSpace& bMat,
101 DenseLinearSpace& bMat,
H A Dsdpa_newton.cpp171 bMat.terminate(); in terminate()
1297 targ[k].bMat = &bMat; in compute_bMat_dense_SDP_thread()
1446 targ->bMat->de_ele[i+m*j] += value; in compute_bMat_dense_SDP_thread_func()
1542 bMat.de_ele[i+m*j] += value; in compute_bMat_dense_SDP()
1543 bMat.de_ele[j+m*i] += value; in compute_bMat_dense_SDP()
1545 bMat.de_ele[i+m*i] += value; in compute_bMat_dense_SDP()
1894 bMat.de_ele[i+m*j] += value; in compute_bMat_dense_LP()
1895 bMat.de_ele[j+m*i] += value; in compute_bMat_dense_LP()
1897 bMat.de_ele[i+m*i] += value; in compute_bMat_dense_LP()
1949 bMat.setZero(); in Make_bMat()
[all …]
H A Dsdpa_newton.h65 DenseMatrix bMat; // the coefficent of Schur complement variable
279 DenseMatrix* bMat; member
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/muq2/modules/Modeling/test/LinearAlgebra/
H A DLinearOperatorTests.cpp218 Eigen::MatrixXd bMat = trueProd*x; in TEST() local
220 for(int j=0; j<bMat.cols(); ++j) in TEST()
222 for(int i=0; i<bMat.rows(); ++i) in TEST()
274 Eigen::MatrixXd bMat = (A+B)*x; in TEST() local
276 for(int j=0; j<bMat.cols(); ++j) in TEST()
278 for(int i=0; i<bMat.rows(); ++i) in TEST()
306 for(int j=0; j<bMat.cols(); ++j) in TEST()
308 for(int i=0; i<bMat.rows(); ++i) in TEST()
358 bMat.topRows(A.rows()) = A*x; in TEST()
359 bMat.bottomRows(B.rows()) = B*x; in TEST()
[all …]
/dports/biology/seqan1/seqan-1.3.1/seqan/graph_algorithms/
H A Dgraph_algorithm_hmm.h348 TBackwardMatrix& bMat) in _backwardAlgorithm() argument
359 resize(bMat, numCols * numRows, 0.0); in _backwardAlgorithm()
363 value(bMat, (len + 1) * numRows + eState) = 1.0; in _backwardAlgorithm()
399 value(bMat, len * numRows + value(itRealState)) = sumValue; in _backwardAlgorithm()
452 value(bMat, value(itSilentState)) = sumValue; in _backwardAlgorithm()
463 value(bMat, bState) = sumValue; in _backwardAlgorithm()
474 return value(bMat, bState); in _backwardAlgorithm()
501 String<TProbability> bMat; in backwardAlgorithm() local
502 return _backwardAlgorithm(hmm, seq, bMat); in backwardAlgorithm()
855 String<TProbability> bMat; in _baumWelchAlgorithm() local
[all …]
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_algorithms/
H A Dgraph_algorithm_hmm.h382 TBackwardMatrix& bMat) in _backwardAlgorithm() argument
392 resize(bMat, numCols * numRows, 0.0); in _backwardAlgorithm()
396 value(bMat, (len + 1) * numRows + eState) = 1.0; in _backwardAlgorithm()
432 value(bMat, len * numRows + value(itRealState)) = sumValue; in _backwardAlgorithm()
485 value(bMat, value(itSilentState)) = sumValue; in _backwardAlgorithm()
496 value(bMat, bState) = sumValue; in _backwardAlgorithm()
507 return value(bMat, bState); in _backwardAlgorithm()
535 String<TProbability> bMat; in backwardAlgorithm() local
536 return _backwardAlgorithm(hmm, seq, bMat); in backwardAlgorithm()
870 String<TProbability> bMat; in _baumWelchAlgorithm() local
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/
H A Dgraph_algorithm_hmm.h382 TBackwardMatrix& bMat) in _backwardAlgorithm() argument
392 resize(bMat, numCols * numRows, 0.0); in _backwardAlgorithm()
396 value(bMat, (len + 1) * numRows + eState) = 1.0; in _backwardAlgorithm()
432 value(bMat, len * numRows + value(itRealState)) = sumValue; in _backwardAlgorithm()
485 value(bMat, value(itSilentState)) = sumValue; in _backwardAlgorithm()
496 value(bMat, bState) = sumValue; in _backwardAlgorithm()
507 return value(bMat, bState); in _backwardAlgorithm()
535 String<TProbability> bMat; in backwardAlgorithm() local
536 return _backwardAlgorithm(hmm, seq, bMat); in backwardAlgorithm()
870 String<TProbability> bMat; in _baumWelchAlgorithm() local
[all …]
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_algorithms/
H A Dgraph_algorithm_hmm.h384 TBackwardMatrix& bMat) in _backwardAlgorithm() argument
395 resize(bMat, numCols * numRows, 0.0); in _backwardAlgorithm()
399 value(bMat, (len + 1) * numRows + eState) = 1.0; in _backwardAlgorithm()
435 value(bMat, len * numRows + value(itRealState)) = sumValue; in _backwardAlgorithm()
488 value(bMat, value(itSilentState)) = sumValue; in _backwardAlgorithm()
499 value(bMat, bState) = sumValue; in _backwardAlgorithm()
510 return value(bMat, bState); in _backwardAlgorithm()
539 String<TProbability> bMat; in backwardAlgorithm() local
540 return _backwardAlgorithm(hmm, seq, bMat); in backwardAlgorithm()
878 String<TProbability> bMat; in _baumWelchAlgorithm() local
[all …]
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/muq2/modules/Modeling/src/LinearAlgebra/
H A DKroneckerProductOperator.cpp23 Eigen::Map<Eigen::MatrixXd> bMat(&output(0,i), B->rows(), A->rows()); in Apply() local
25 bMat = A->Apply( B->Apply( xMat ).transpose() ).transpose(); in Apply()
41 Eigen::Map<Eigen::MatrixXd> bMat(&output(0,i), B->cols(), A->cols()); in ApplyTranspose() local
43 bMat = A->ApplyTranspose( B->ApplyTranspose( xMat ).transpose() ).transpose(); in ApplyTranspose()
/dports/math/vtk6/VTK-6.2.0/Common/Math/
H A DvtkMatrix4x4.h205 ConstSqMatPtr bMat = reinterpret_cast<ConstSqMatPtr>(b); in Multiply4x4() local
214 cMat[i][k] = aMat[i][0] * bMat[0][k] + in Multiply4x4()
215 aMat[i][1] * bMat[1][k] + in Multiply4x4()
216 aMat[i][2] * bMat[2][k] + in Multiply4x4()
217 aMat[i][3] * bMat[3][k]; in Multiply4x4()
H A DvtkMatrix3x3.cxx118 SqMatPtr bMat = (SqMatPtr) b; in Multiply3x3() local
127 Accum[i][k] = aMat[i][0] * bMat[0][k] + in Multiply3x3()
128 aMat[i][1] * bMat[1][k] + in Multiply3x3()
129 aMat[i][2] * bMat[2][k]; in Multiply3x3()
/dports/math/arpack-ng/arpack-ng-3.8.0/EXAMPLES/MATRIX_MARKET/
H A DarpackSolver.hpp412 …void aupd(a_int * ido, char const * bMat, a_int nbDim, char const * which, float * resid, float * … in aupd() argument
424 …void aupd(a_int * ido, char const * bMat, a_int nbDim, char const * which, double * resid, double … in aupd() argument
440 cnaupd_c(ido, bMat, nbDim, which, nbEV, tol, reinterpret_cast<_Complex float*>(resid), nbCV, in aupd()
449 znaupd_c(ido, bMat, nbDim, which, nbEV, tol, reinterpret_cast<_Complex double*>(resid), nbCV, in aupd()
511 … a_int ldz, char const * bMat, a_int nbDim, char const * which, float * resid, float * v, in eupd() argument
519 … bMat, nbDim, which, nbEV, tol, resid, nbCV, v, ldv, iparam, ipntr, workd, workl, lworkl, &info); in eupd()
533 … bMat, nbDim, which, nbEV, tol, resid, nbCV, v, ldv, iparam, ipntr, workd, workl, lworkl, &info); in eupd()
548 … a_int ldz, char const * bMat, a_int nbDim, char const * which, double * resid, double * v, in eupd() argument
594 bMat, nbDim, which, nbEV, tol, reinterpret_cast<_Complex float*>(resid), nbCV, in eupd()
618 bMat, nbDim, which, nbEV, tol, reinterpret_cast<_Complex double*>(resid), nbCV, in eupd()
[all …]
/dports/graphics/ospray-studio/ospray_studio-0.9.1/sg/importer/
H A DImporter.cpp127 auto &bMat = context->baseMaterialRegistry->child(mat.first); in importScene() local
137 if (bMat.hasChild(param.first)) in importScene()
138 bMat[param.first] = p.value(); in importScene()
140 bMat.createChild( in importScene()
/dports/science/gromacs/gromacs-2021.4/src/gromacs/gmxana/
H A Dgmx_rms.cpp308 if (bFile2 && !bMat && !bBond) in gmx_rms()
319 bMat = TRUE; in gmx_rms()
382 if (bMat || bBond) in gmx_rms()
469 if (bMat || bBond || bPrev) in gmx_rms()
732 if (bMat) in gmx_rms()
768 if (bMat || bBond) in gmx_rms()
772 if (bMat) in gmx_rms()
836 if (bMat) in gmx_rms()
858 if (bMat) in gmx_rms()
915 if (bMat && (avl > 0)) in gmx_rms()
[all …]
H A Dgmx_mindist.cpp349 gmx_bool bMat, in dist_plot() argument
395 if (bMat) in dist_plot()
497 if (bMat) in dist_plot()
633 int freeLeg = bMat ? (ng == 1 ? 1 : (ng * (ng - 1)) / 2) : ng - 1; in dist_plot()
711 gmx_bool bMat = FALSE, bPI = FALSE, bSplit = FALSE, bMax = FALSE, bPBC = TRUE; in gmx_mindist() local
717 { "-matrix", FALSE, etBOOL, { &bMat }, "Calculate half a matrix of group-group distances" }, in gmx_mindist()
791 else if (!bMat) in gmx_mindist()
812 if (bMat && (ng == 1)) in gmx_mindist()
828 GMX_RELEASE_ASSERT(!bMat || ng > 1, "Must have more than one group with bMat"); in gmx_mindist()
851 dist_plot(trxfnm, atmfnm, distfnm, numfnm, resfnm, oxfnm, rcutoff, bMat, in gmx_mindist()
/dports/graphics/alembic/alembic-1.8.3/lib/Alembic/AbcGeom/Tests/
H A DXformTests2.cpp128 M44d bMat = b.getSchema().getValue().getMatrix(); in rotateTest() local
129 TESTING_ASSERT( aMat == bMat ); in rotateTest()
/dports/www/grafana8/grafana-8.3.6/vendor/gonum.org/v1/gonum/lapack/testlapack/
H A Ddbdsqr.go103 bMat := constructBidiagonal(uplo, n, dCopy, eCopy)
125 …if !scalar.EqualWithinAbsOrRel(ansMat.Data[i*ansMat.Stride+j], bMat.Data[i*bMat.Stride+j], 1e-8, 1…
H A Dgeneral.go449 bMat := blas64.General{
457 bMat.Data[i*bMat.Stride+i] = d[i]
459 bMat.Data[i*bMat.Stride+i+1] = e[i]
461 bMat.Data[(i+1)*bMat.Stride+i] = e[i]
464 bMat.Data[(n-1)*bMat.Stride+n-1] = d[n-1]
465 return bMat
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/openshift/api/vendor/gonum.org/v1/gonum/lapack/testlapack/
H A Ddbdsqr.go102 bMat := constructBidiagonal(uplo, n, dCopy, eCopy)
124 …if !floats.EqualWithinAbsOrRel(ansMat.Data[i*ansMat.Stride+j], bMat.Data[i*bMat.Stride+j], 1e-8, 1…
/dports/math/scilab/scilab-6.1.1/scilab/modules/scicos/tests/unit_tests/
H A Dvar2vec.tst59 bMat = (Mat>15);
60 assert_checkequal(vec2var(var2vec(bMat)), bMat);
H A Dvar2vec.dia.ref54 bMat = (Mat>15);
55 assert_checkequal(vec2var(var2vec(bMat)), bMat);
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/openshift/api/vendor/gonum.org/v1/gonum/mat/
H A Dlist_test.go1075 for _, bMat := range testMatrices {
1081 if !legalType(aMat, bMat) {
1087 if !legalDims(bMat, test.br, test.bc) {
1091 b := makeRandOf(bMat, test.br, test.bc)
1307 for _, bMat := range testMatrices {
1313 if !legalTypes(aMat, bMat) {
1319 if !legalDims(bMat, test.br, test.bc) {
1323 b := makeRandOf(bMat, test.br, test.bc)

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