| /dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
| H A D | cram_structs.h | 732 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2403 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2405 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 3971 fd->bam_flag_swap[i] = f; in cram_init_tables()
3992 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
| H A D | cram_structs.h | 739 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2350 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2352 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 4341 fd->bam_flag_swap[i] = f; in cram_init_tables()
4362 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
| H A D | cram_structs.h | 732 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2403 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2405 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 3993 fd->bam_flag_swap[i] = f; in cram_init_tables()
4014 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/stacks/stacks-2.4/htslib/cram/ |
| H A D | cram_structs.h | 723 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2405 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2407 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 3922 fd->bam_flag_swap[i] = f; in cram_init_tables()
3943 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
| H A D | cram_structs.h | 724 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2405 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2407 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 3920 fd->bam_flag_swap[i] = f; in cram_init_tables()
3941 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/iolib/io_lib-io_lib-1-14-10/progs/ |
| H A D | cram_dump.c | 387 printf("BF = %d => SAM 0x%x (ret %d, out_sz %d)\n", bf, fd->bam_flag_swap[bf], r, out_sz); in main()
388 bf = fd->bam_flag_swap[bf]; in main()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
| H A D | cram_structs.h | 830 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2460 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2462 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 5080 fd->bam_flag_swap[i] = f; in cram_init_tables()
5101 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/htslib/htslib-1.14/cram/ |
| H A D | cram_structs.h | 830 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
|
| H A D | cram_decode.c | 2460 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2462 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 5080 fd->bam_flag_swap[i] = f; in cram_init_tables()
5101 fd->bam_flag_swap[i] = i; in cram_init_tables()
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| /dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
| H A D | cram_structs.h | 817 unsigned int bam_flag_swap[0x1000]; // cram -> bam flags member
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| H A D | cram_decode.c | 2520 bf >= sizeof(fd->bam_flag_swap)/sizeof(*fd->bam_flag_swap)) in cram_decode_slice()
2522 bf = fd->bam_flag_swap[bf]; in cram_decode_slice()
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| H A D | cram_io.c | 4676 fd->bam_flag_swap[i] = f; in cram_init_tables()
4697 fd->bam_flag_swap[i] = i; in cram_init_tables()
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