Home
last modified time | relevance | path

Searched refs:baseQual (Results 1 – 9 of 9) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/pairhmm/
H A DPairHMMUnitTest.java52 final int baseQual, insQual, delQual, gcp; field in PairHMMUnitTest.BasicLikelihoodTestProvider
64 this.baseQual = baseQual; in BasicLikelihoodTestProvider()
159 for ( final int baseQual : baseQuals ) { in makeBasicLikelihoodTests()
212 for ( final int baseQual : baseQuals ) { in makeOptimizedLikelihoodTests()
348 final byte baseQual = 20; in testMultipleReadMatchesInHaplotype()
355 Utils.dupBytes(baseQual, readBases.length), in testMultipleReadMatchesInHaplotype()
377 final byte baseQual = 20; in testReadSameAsHaplotype()
395 final byte baseQual = 20; in testAllMatchingRead()
447 final byte baseQual = 30; in testReallyBigReads()
464 final byte baseQual = 30; in testPreviousBadValue()
[all …]
/dports/biology/bamutil/bamUtil-1.0.15/test/
H A DtestDiff.sh42 ../bin/bam diff --in1 testFiles/testDiff1.sam --in2 testFiles/testDiff1.bam --seq --baseQual --tags…
46 ../bin/bam diff --in1 testFiles/testDiff1.sam --in2 testFiles/testDiff2.sam --seq --baseQual --tags…
50 …les/testDiff1.sam --in2 testFiles/testDiff2.sam --recPoolSize 4 --seq --baseQual --tags "OP:i;MD:Z…
54 …les/testDiff1.sam --in2 testFiles/testDiff2.sam --recPoolSize 3 --seq --baseQual --tags "OP:i;MD:Z…
58 …les/testDiff1.sam --in2 testFiles/testDiff2.sam --recPoolSize 2 --seq --baseQual --tags "OP:i;MD:Z…
62 …les/testDiff1.sam --in2 testFiles/testDiff2.sam --recPoolSize 1 --seq --baseQual --tags "OP:i,MD:Z…
66 ../bin/bam diff --in1 testFiles/testDiff1.sam --in2 testFiles/testDiff2.sam --seq --baseQual --tags…
85 ../bin/bam diff --in1 testFiles/testDiff2.sam --in2 testFiles/testDiff1.sam --seq --baseQual --tags…
89 ../bin/bam diff --in1 testFiles/testDiff2.sam --in2 testFiles/testDiff1.sam --seq --baseQual --tags…
94 ../bin/bam diff --in1 testFiles/testDiff3.sam --in2 testFiles/testDiff4.sam --seq --baseQual --tags…
[all …]
/dports/graphics/dcp2icc/dcp2icc-0.1/XMP-Toolkit-SDK-4.4.2/java/XMPCore/src/com/adobe/xmp/impl/
H A DXMPNormalizer.java556 XMPNode baseQual = (XMPNode) bn.next(); in compareAliasedSubtrees() local
557 compareAliasedSubtrees (aliasQual, baseQual, false); in compareAliasedSubtrees()
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/
H A DHaplotypeCallerGenotypingEngineUnitTest.java149 final byte baseQual = (byte)30; in testAddMiscellaneousAllele()
151 final byte[] baseQuals = Utils.dupBytes(baseQual, readBases.length()); in testAddMiscellaneousAllele()
/dports/graphics/exiv2/exiv2-0.27.5-Source/xmpsdk/src/
H A DXMPMeta-Parse.cpp314 XMP_Node * baseQual = baseNode->qualifiers[qualNum]; in CompareAliasedSubtrees() local
315 CompareAliasedSubtrees ( aliasQual, baseQual, false ); in CompareAliasedSubtrees()
/dports/graphics/dcp2icc/dcp2icc-0.1/XMP-Toolkit-SDK-4.4.2/source/XMPCore/
H A DXMPMeta-Parse.cpp312 XMP_Node * baseQual = baseNode->qualifiers[qualNum]; in CompareAliasedSubtrees() local
313 CompareAliasedSubtrees ( aliasQual, baseQual, false ); in CompareAliasedSubtrees()
/dports/graphics/digikam/digikam-7.4.0/core/libs/dngwriter/extra/xmp_sdk/XMPCore/source/
H A DXMPMeta-Parse.cpp286 XMP_Node * baseQual = baseNode->qualifiers[qualNum]; in CompareAliasedSubtrees() local
287 CompareAliasedSubtrees ( aliasQual, baseQual, errorCallback, false ); in CompareAliasedSubtrees()
/dports/textproc/exempi/exempi-2.5.2/XMPCore/source/
H A DXMPMeta-Parse.cpp286 XMP_Node * baseQual = baseNode->qualifiers[qualNum]; in CompareAliasedSubtrees() local
287 CompareAliasedSubtrees ( aliasQual, baseQual, errorCallback, false ); in CompareAliasedSubtrees()
/dports/graphics/photoflow/PhotoFlow-8472024f/src/external/exiv2/xmpsdk/src/
H A DXMPMeta-Parse.cpp314 XMP_Node * baseQual = baseNode->qualifiers[qualNum]; in CompareAliasedSubtrees() local
315 CompareAliasedSubtrees ( aliasQual, baseQual, false ); in CompareAliasedSubtrees()