/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/ |
H A D | scramble.c | 161 int bases_per_slice = 0; in main() local 199 bases_per_slice = s_opt * 500; // guesswork... in main() 203 bases_per_slice = atoi(optarg); in main() 431 if (bases_per_slice) in main() 432 if (scram_set_option(out, CRAM_OPT_BASES_PER_SLICE, bases_per_slice)) in main()
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/dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
H A D | cram_structs.h | 717 int bases_per_slice; member
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H A D | cram_encode.c | 3076 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3099 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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H A D | cram_io.c | 4129 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 4414 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
H A D | cram_structs.h | 724 int bases_per_slice; member
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H A D | cram_encode.c | 3269 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3302 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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H A D | cram_io.c | 4500 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 4794 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
H A D | cram_structs.h | 717 int bases_per_slice; member
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H A D | cram_encode.c | 3077 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3100 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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H A D | cram_io.c | 4151 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 4436 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
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/dports/biology/stacks/stacks-2.4/htslib/cram/ |
H A D | cram_structs.h | 710 int bases_per_slice; member
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H A D | cram_encode.c | 3070 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3093 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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H A D | cram_io.c | 4079 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 4353 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
H A D | cram_structs.h | 711 int bases_per_slice; member
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H A D | cram_encode.c | 3084 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3107 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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H A D | cram_io.c | 4078 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 4352 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
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/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
H A D | cram_structs.h | 812 int bases_per_slice; member
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H A D | cram_io.c | 5242 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 5602 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption() 5603 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption() 5607 fd->bases_per_slice = va_arg(args, int); in cram_set_voption() 5831 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption() 5832 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption()
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H A D | cram_encode.c | 3348 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3381 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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/dports/biology/htslib/htslib-1.14/cram/ |
H A D | cram_structs.h | 812 int bases_per_slice; member
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H A D | cram_io.c | 5242 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen() 5602 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption() 5603 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption() 5607 fd->bases_per_slice = va_arg(args, int); in cram_set_voption() 5831 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption() 5832 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption()
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H A D | cram_encode.c | 3348 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3381 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
H A D | cram_structs.h | 801 int bases_per_slice; member
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H A D | cram_io.c | 5044 fd->bases_per_slice = BASES_PER_SLICE; in cram_open() 5151 fd->bases_per_slice = BASES_PER_SLICE; in cram_open_by_callbacks() 5277 fd->bases_per_slice = BASES_PER_SLICE; in cram_openw_by_callbacks() 5584 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
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H A D | cram_encode.c | 3074 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq() 3096 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
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