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Searched refs:bases_per_slice (Results 1 – 25 of 25) sorted by relevance

/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/
H A Dscramble.c161 int bases_per_slice = 0; in main() local
199 bases_per_slice = s_opt * 500; // guesswork... in main()
203 bases_per_slice = atoi(optarg); in main()
431 if (bases_per_slice) in main()
432 if (scram_set_option(out, CRAM_OPT_BASES_PER_SLICE, bases_per_slice)) in main()
/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dcram_structs.h717 int bases_per_slice; member
H A Dcram_encode.c3076 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3099 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
H A Dcram_io.c4129 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
4414 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A Dcram_structs.h724 int bases_per_slice; member
H A Dcram_encode.c3269 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3302 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
H A Dcram_io.c4500 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
4794 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dcram_structs.h717 int bases_per_slice; member
H A Dcram_encode.c3077 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3100 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
H A Dcram_io.c4151 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
4436 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dcram_structs.h710 int bases_per_slice; member
H A Dcram_encode.c3070 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3093 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
H A Dcram_io.c4079 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
4353 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dcram_structs.h711 int bases_per_slice; member
H A Dcram_encode.c3084 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3107 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
H A Dcram_io.c4078 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
4352 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/
H A Dcram_structs.h812 int bases_per_slice; member
H A Dcram_io.c5242 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
5602 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption()
5603 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption()
5607 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
5831 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption()
5832 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption()
H A Dcram_encode.c3348 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3381 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
/dports/biology/htslib/htslib-1.14/cram/
H A Dcram_structs.h812 int bases_per_slice; member
H A Dcram_io.c5242 fd->bases_per_slice = BASES_PER_SLICE; in cram_dopen()
5602 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption()
5603 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption()
5607 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
5831 if (fd->bases_per_slice == BASES_PER_SLICE) in cram_set_voption()
5832 fd->bases_per_slice = fd->seqs_per_slice * 500; in cram_set_voption()
H A Dcram_encode.c3348 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3381 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dcram_structs.h801 int bases_per_slice; member
H A Dcram_io.c5044 fd->bases_per_slice = BASES_PER_SLICE; in cram_open()
5151 fd->bases_per_slice = BASES_PER_SLICE; in cram_open_by_callbacks()
5277 fd->bases_per_slice = BASES_PER_SLICE; in cram_openw_by_callbacks()
5584 fd->bases_per_slice = va_arg(args, int); in cram_set_voption()
H A Dcram_encode.c3074 (c->s_num_bases >= fd->bases_per_slice)) { in cram_put_bam_seq()
3096 c->s_num_bases >= fd->bases_per_slice) { in cram_put_bam_seq()