Home
last modified time | relevance | path

Searched refs:bayes (Results 1 – 25 of 413) sorted by relevance

12345678910>>...17

/dports/biology/migrate/migrate-3.6.11/src/
H A Dpriors.c249 bayes_fmt * bayes, in log_prior_ratio_gamma() argument
252 if((newparam > bayes->maxparam[which]) || (newparam < bayes->minparam[which])) in log_prior_ratio_gamma()
271 bayes_fmt * bayes = world->bayes; in log_prior_gamma() local
291 if((p0 > bayes->maxparam[i]) || (p0 < bayes->minparam[i])) in log_prior_gamma()
297 val += logpdf_truncgamma(a,b,bayes->minparam[i],bayes->maxparam[i],p0); in log_prior_gamma()
309 bayes_fmt * bayes = world->bayes; in log_prior_gamma1() local
363 …world->bayes->betaparam[0] = find_beta_truncgamma(a*b, a, world->bayes->minparam[0],world->bayes->… in main()
365 a,world->bayes->betaparam[0],world->bayes->minparam[0],world->bayes->maxparam[0]); in main()
369 xx=trunc_gamma_rand(a,b,world->bayes->minparam[0], world->bayes->maxparam[0]); in main()
378 MYREAL v = (world->bayes->maxparam[0]-world->bayes->minparam[0]) * 0.2; in main()
[all …]
H A Dbayes.c671 bayes_fmt * bayes = world->bayes; in log_prior_uni() local
712 bayes_fmt * bayes = world->bayes; in log_prior_uni1() local
939 bayes_fmt *bayes = world->bayes; in log_prior_mult() local
985 bayes_fmt * bayes = world->bayes; in log_prior_mult1() local
1044 bayes_fmt *bayes = world->bayes; in calculate_plotter_priors() local
1337 bayes_fmt * bayes = world->bayes; in uniform_proposal() local
1723 bayes_fmt * bayes = world->bayes; in bayes_save_parameter() local
2274 bayes_fmt *bayes = world->bayes; in bayes_reset() local
2786 bayes_fmt *bayes = world->bayes; in construct_param_hist() local
3060 bayes_fmt *bayes = world->bayes; in print_param_order() local
[all …]
H A Dslice.c110 if(world->bayes->mu) in set_multi_slice_param()
125 bayes_fmt * bayes = world-> bayes; in slice() local
126 MYREAL *minparam = bayes->minparam; in slice()
127 MYREAL *maxparam = bayes->maxparam; in slice()
154 w = bayes->map[which][1]; in slice()
163 return world->bayes->oldval; in slice()
254 bayes_fmt * bayes = world-> bayes; in expslice() local
284 w = bayes->map[which][1]; in expslice()
293 return world->bayes->oldval; in expslice()
537 if(world->bayes->mu) in expallslice()
[all …]
H A Dhistogram.c183 bayes_fmt * bayes = world->bayes; in read_bayes_fromfile() local
188 MYREAL *delta = bayes->deltahist; in read_bayes_fromfile()
296 …bayes->histogram[locus].results = (float *) mycalloc(bayes->histogram[locus].binsum + 1, sizeof(fl… in read_bayes_fromfile()
297 …bayes->histogram[locus].set95 = (char *) mycalloc(bayes->histogram[locus].binsum* 2 + 2, sizeof(ch… in read_bayes_fromfile()
298 …bayes->histogram[locus].set50 = world->bayes->histogram[locus].set95 + bayes->histogram[locus].bin… in read_bayes_fromfile()
303 hist = &bayes->histogram[locus]; in read_bayes_fromfile()
311 if(shortcut(j0,bayes,&j)) in read_bayes_fromfile()
355 bayes->histtotal[locus * np + j] += 1; in read_bayes_fromfile()
358 if(bayes->mu) in read_bayes_fromfile()
376 if(shortcut(j0,bayes,&j)) in read_bayes_fromfile()
[all …]
H A Dautotune.c39 bayes_fmt *bayes = world->bayes; in autotune_proposal() local
40 MYREAL *delta = bayes->delta; in autotune_proposal()
42 const MYREAL ma = bayes->maxparam[which]; in autotune_proposal()
43 const MYREAL mi = bayes->minparam[which]; in autotune_proposal()
57 if(bayes->trials[which] % space == 0) in autotune_proposal()
60 ratio = bayes->accept[which]/(1.0+bayes->trials[which]); in autotune_proposal()
109 bayes_fmt * bayes = world->bayes; in mean_acceptance_rate() local
115 for (i = 0; i < world->numpop2 + bayes->mu; i++) in mean_acceptance_rate()
117 if(shortcut(i,bayes,&which)) in mean_acceptance_rate()
121 sum += world->bayes->accept[which]/(1.0+world->bayes->trials[which]); in mean_acceptance_rate()
[all …]
H A Dcorrelation.c70 const long nn = world->numpop2+(long)(world->bayes->mu); in covarianceBayes()
87 if(shortcut(k0,world->bayes,&k)) in covarianceBayes()
102 if(shortcut(k0,world->bayes,&k)) in covarianceBayes()
108 if(shortcut(l0,world->bayes,&l)) in covarianceBayes()
143 world->bayes->histogram[locus].n = world->bayes->numparams; in covariance_bayes()
144 …covarianceBayes(world,world->bayes->numparams,world->bayes->params, offset, locus,&world->bayes->h… in covariance_bayes()
155 bayeshistogram_fmt *target = &world->bayes->histogram[world->loci]; in covariance_summary()
159 if(world->bayes->histogram[0].covariance==NULL) in covariance_summary()
169 cov = world->bayes->histogram[locus].covariance; in covariance_summary()
H A Dpriors.h41 extern MYREAL propose_gamma_newparam (MYREAL param, long which, bayes_fmt * bayes, MYREAL *r);
42 …amma(MYREAL newparam, MYREAL oldparam, MYREAL delta, MYREAL r, bayes_fmt * bayes, long whichparam);
43 extern MYREAL log_prior_ratio_gamma(MYREAL newparam, MYREAL oldparam, bayes_fmt * bayes, long whi…
46 …amma(MYREAL newparam, MYREAL oldparam, MYREAL delta, MYREAL r, bayes_fmt * bayes, long whichparam);
H A Dreporter.c348 if(world->bayes->mu) in collect_acceptance()
396 bayes_fmt * bayes = world->bayes; in print_bayes_ess() local
414 if(bayes->map[pa0][1] != INVALID) in print_bayes_ess()
416 pa = bayes->map[pa0][1]; in print_bayes_ess()
623 if(world->bayes->map[i][1] == INVALID) in single_chain_var()
627 j = world->bayes->map[i][1]; in single_chain_var()
660 if(world->bayes->map[i][1] == INVALID) in single_chain_var()
664 j = world->bayes->map[i][1]; in single_chain_var()
754 if(world->bayes->map[i][1] == INVALID) in calculate_ess_frombayes()
758 j = world->bayes->map[i][1]; in calculate_ess_frombayes()
[all …]
/dports/mail/spamassassin-devel/spamassassin-1ea352210/masses/bayes-testing/
H A Dbayes-10pcv-driver110 ../sa-learn --dump --dbpath=$tmpdir/dbs/bayes > $results/bayes_db.dump
192 --bayes --mbox $rdir/testbuckets/ham.$subbucket \
197 --bayes --mbox $rdir/testbuckets/spam.$subbucket \
204 --bayes --mbox $rdir/hbuckettest \
209 --bayes --mbox $rdir/sbuckettest \
214 ./bayes-testing/draw-bayes-histogram \
218 ./bayes-testing/bayes-thresholds \
222 ./bayes-testing/bayes-static-thresholds \
241 ./bayes-testing/draw-bayes-histogram \
244 ./bayes-testing/bayes-thresholds \
[all …]
/dports/lang/newlisp/newlisp-10.7.5/qa-specific-tests/
H A Dqa-bayes20 ;(bayes-train '() (parse (lower-case (read-file "Comedy.txt")) "[^a-z]+" 0) 'DoyleDowson)
21 ;(bayes-train (parse (lower-case (read-file "Sherlock.txt")) "[^a-z]+" 0) '() 'DoyleDowson)
33 (bayes-train '() (parse (lower-case ComedyOfMasks) "[^a-z]+" 0) 'DoyleDowson)
35 (setf result (bayes-query (parse "he was putting the last touches to a picture") 'DoyleDowson))
41 (setf result (bayes-query (parse "immense faculties and extraordinary powers of observation") 'Doyl…
56 (setf result (bayes-query '(test-positive) Data true) )
59 (setf result (bayes-query '(test-positive test-positive) Data true) )
62 (setf result (bayes-query '(test-positive test-positive test-positive) Data true) )
/dports/math/R-cran-Zelig/Zelig/
H A DNAMESPACE47 "Zelig-bayes",
48 "Zelig-factor-bayes",
49 "Zelig-logit-bayes",
50 "Zelig-mlogit-bayes",
51 "Zelig-normal-bayes",
52 "Zelig-oprobit-bayes",
53 "Zelig-poisson-bayes",
54 "Zelig-probit-bayes",
55 "Zelig-tobit-bayes",
H A DDESCRIPTION40 'model-tobit.R' 'model-bayes.R' 'model-tobit-bayes.R'
42 'model-probit-bayes.R' 'model-poisson.R'
43 'model-poisson-bayes.R' 'model-oprobit-bayes.R'
44 'model-normal.R' 'model-normal-bayes.R' 'model-mlogit-bayes.R'
46 'model-logit-bayes.R' 'model-factor-bayes.R'
H A DMD510 9ec8819a950c30f1304af690bc072df7 *R/model-bayes.R
15 2f420918edb49510981c1b8cde437ac0 *R/model-factor-bayes.R
22 f0081bead3ac50ea4b4297fed17425be *R/model-logit-bayes.R
29 ad0fddd7110c4cfe943bf8d9daa54c72 *R/model-mlogit-bayes.R
31 53825c4a87aeab87ca1f8c54fefbb380 *R/model-normal-bayes.R
35 ddfda5f2729e9e811623422b7bbad397 *R/model-oprobit-bayes.R
36 e07877092e4442511bfa634f3e259c74 *R/model-poisson-bayes.R
40 e2e4f36d1f52837ca73dd9ae79800c9e *R/model-probit-bayes.R
48 cff2612a2388afaef910b090fc75c933 *R/model-tobit-bayes.R
104 fe76c142d8d427f6ce4f0818969d3009 *man/Zelig-bayes-class.Rd
[all …]
/dports/math/R-cran-LearnBayes/LearnBayes/man/
H A Ddiscrete.bayes.Rd1 \name{discrete.bayes}
2 \alias{discrete.bayes}
3 \alias{print.bayes}
4 \alias{plot.bayes}
5 \alias{summary.bayes}
13 discrete.bayes(df,prior,y,...)
36 discrete.bayes(dbinom,prior,y,size=n)
H A Dbayes.model.selection.Rd1 \name{bayes.model.selection}
2 \alias{bayes.model.selection}
8 bayes.model.selection(y, X, c, constant=TRUE)
29 bayes.model.selection(logtime,X,100)
H A Dbayes.influence.Rd1 \name{bayes.influence}
2 \alias{bayes.influence}
10 bayes.influence(theta,data)
29 intervals=bayes.influence(theta,cancermortality)
H A Dbayes.probit.Rd1 \name{bayes.probit}
2 \alias{bayes.probit}
11 bayes.probit(y,X,m,prior=list(beta=0,P=0))
32 s=bayes.probit(response,X,m,prior)
H A Ddiscrete.bayes.2.Rd1 \name{discrete.bayes.2}
2 \alias{discrete.bayes.2}
11 discrete.bayes.2(df,prior,y=NULL,...)
38 discrete.bayes.2(twoproplike,prior)
/dports/textproc/py-simplebayes/simplebayes-1.5.8/
H A DPKG-INFO40 bayes = simplebayes.SimpleBayes()
42 bayes.train('good', 'sunshine drugs love sex lobster sloth')
43 bayes.train('bad', 'fear death horror government zombie')
48 print bayes.score('i fear zombies and love the government')
50 bayes.untrain('bad', 'fear death')
52 assert bayes.tally('bad') == 3
59 bayes = simplebayes.SimpleBayes(cache_path='/my/cache/')
63 if not bayes.cache_train():
66 bayes.train('bad', 'fear death horror government zombie')
69 bayes.persist_cache()
[all …]
/dports/textproc/py-simplebayes/simplebayes-1.5.8/simplebayes.egg-info/
H A DPKG-INFO40 bayes = simplebayes.SimpleBayes()
42 bayes.train('good', 'sunshine drugs love sex lobster sloth')
43 bayes.train('bad', 'fear death horror government zombie')
48 print bayes.score('i fear zombies and love the government')
50 bayes.untrain('bad', 'fear death')
52 assert bayes.tally('bad') == 3
59 bayes = simplebayes.SimpleBayes(cache_path='/my/cache/')
63 if not bayes.cache_train():
66 bayes.train('bad', 'fear death horror government zombie')
69 bayes.persist_cache()
[all …]
/dports/textproc/weka/weka-3-8-5/doc/
H A Dpackage-list5 weka.classifiers.bayes
6 weka.classifiers.bayes.net
7 weka.classifiers.bayes.net.estimate
8 weka.classifiers.bayes.net.search
9 weka.classifiers.bayes.net.search.ci
10 weka.classifiers.bayes.net.search.fixed
11 weka.classifiers.bayes.net.search.global
12 weka.classifiers.bayes.net.search.local
/dports/mail/spamassassin-devel/spamassassin-1ea352210/lib/Mail/SpamAssassin/
H A DBayesStore.pm56 my ($class, $bayes) = @_;
61 'bayes' => $bayes,
107 my $conf = $self->{bayes}->{main}->{conf};
117 $self->{bayes}->read_db_configs();
251 if (!$self->{bayes}->{main}->{learn_caller_will_untie}) {
455 return 1 if ($self->{bayes}->{main}->{learn_force_expire});
458 return 0 if ($self->{bayes}->{main}->{conf}->{bayes_auto_expire} == 0);
466 if (!$self->{bayes}->{main}->{ignore_safety_expire_timeout}) {
479 my $conf = $self->{bayes}->{main}->{conf};
/dports/mail/spamassassin/Mail-SpamAssassin-3.4.5/lib/Mail/SpamAssassin/
H A DBayesStore.pm56 my ($class, $bayes) = @_;
61 'bayes' => $bayes,
107 my $conf = $self->{bayes}->{main}->{conf};
117 $self->{bayes}->read_db_configs();
251 if (!$self->{bayes}->{main}->{learn_caller_will_untie}) {
455 return 1 if ($self->{bayes}->{main}->{learn_force_expire});
458 return 0 if ($self->{bayes}->{main}->{conf}->{bayes_auto_expire} == 0);
466 if (!$self->{bayes}->{main}->{ignore_safety_expire_timeout}) {
479 my $conf = $self->{bayes}->{main}->{conf};
/dports/mail/spamassassin-devel/spamassassin-1ea352210/masses/
H A Dgenerate-corpus8 cat ../../corpus/submit/ham-bayes-nonet*.log > ORIG/ham-set2.log
9 cat ../../corpus/submit/spam-bayes-nonet*.log > ORIG/spam-set2.log
10 cat ../../corpus/submit/ham-bayes-net*.log > ORIG/ham-set3.log
11 cat ../../corpus/submit/spam-bayes-net*.log > ORIG/spam-set3.log
/dports/math/R-cran-LearnBayes/LearnBayes/
H A DNAMESPACE9 S3method(print, bayes)
10 S3method(plot, bayes)
12 S3method(summary, bayes)

12345678910>>...17