Searched refs:bcf_get_alt (Results 1 – 9 of 9) sorted by relevance
/dports/biology/vt/vt-0.57721/ |
H A D | construct_probes.cpp | 133 if (strchr(bcf_get_alt(v, 0), 'N') || strchr(bcf_get_alt(v, 1), 'N')) in construct_probes() 148 alleles.push_back(std::string(bcf_get_alt(v,i))); in construct_probes()
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H A D | candidate_region_extractor.cpp | 142 std::string ref(bcf_get_alt(v, 0)); in is_homopolymer() 143 std::string alt(bcf_get_alt(v, i)); in is_homopolymer() 187 std::string ref(bcf_get_alt(v, 0)); in extract_regions_by_exact_alignment() 188 std::string alt(bcf_get_alt(v, i)); in extract_regions_by_exact_alignment() 290 std::string ref(bcf_get_alt(v, 0)); in extract_regions_by_fuzzy_alignment() 291 std::string alt(bcf_get_alt(v, i)); in extract_regions_by_fuzzy_alignment()
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H A D | hts_utils.cpp | 1043 kputs(bcf_get_alt(v, i), var); in bcf_variant2string() 1104 kputs(bcf_get_alt(v, 0), var); in bcf_variant2string_sorted() 1106 kputs(bcf_get_alt(v, 1), var); in bcf_variant2string_sorted() 1117 kputs(bcf_get_alt(v, 0), var); in bcf_variant2string_sorted() 1137 kputs(bcf_get_alt(v, 0), var); in bcf_alleles2string() 1139 kputs(bcf_get_alt(v, 1), var); in bcf_alleles2string() 1162 kputs(bcf_get_alt(v, 0), var); in bcf_alleles2string_sorted() 1164 kputs(bcf_get_alt(v, 1), var); in bcf_alleles2string_sorted() 1177 kputs(bcf_get_alt(v, 0), var); in bcf_alleles2string_sorted()
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H A D | normalize.cpp | 226 char *s = bcf_get_alt(v, i); in normalize() 232 alleles.push_back(std::string(bcf_get_alt(v, i))); in normalize()
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H A D | multiallelics_consolidator.cpp | 389 std::string alt(bcf_get_alt(mvar.vs[i], 1)); in update_multiallelic_for_printing()
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H A D | fuzzy_partition.cpp | 265 kputs(bcf_get_alt(v, i), var); in bcf_variant2string_with_motif()
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H A D | hts_utils.h | 584 #define bcf_get_alt(v, i) ((v)->d.allele[i]) macro
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H A D | variant.cpp | 659 kputs(bcf_get_alt(v, i), &var); in get_variant_string()
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H A D | consolidate.cpp | 640 alt.append(bcf_get_alt(candidate_indel_vs[i], 1)); in consolidate_multiallelic()
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