| /dports/biology/vt/vt-0.57721/ |
| H A D | uniq.cpp | 129 if(bcf_get_info_string(sr->hdrs[0], crecs[i]->v, "OLD_VARIANT", &dst, &ndst)>0) in uniq()
|
| H A D | bcf_genotyping_buffered_reader.cpp | 2333 if (bcf_get_info_string(odr->hdr, g->v, "FLANKSEQ", &flankseq, &n)>0) in genotype_and_print()
2471 if (bcf_get_info_string(odr->hdr, g->v, "TR", &motif, &n)>0) in genotype_and_print()
2478 if (bcf_get_info_string(odr->hdr, g->v, "FLANKSEQ", &flankseq, &n)>0) in genotype_and_print()
2485 if (bcf_get_info_string(odr->hdr, g->v, "TR", &tr, &n)>0) in genotype_and_print()
2609 if (bcf_get_info_string(odr->hdr, g->v, "MOTIF", &motif, &n)>0) in genotype_and_print()
2616 if (bcf_get_info_string(odr->hdr, g->v, "RU", &ru, &n)>0) in genotype_and_print()
2663 if (bcf_get_info_string(odr->hdr, g->v, "FLANKSEQ", &flankseq, &n)>0) in genotype_and_print()
|
| H A D | hts_utils.cpp | 628 if (bcf_get_info_string(hsrc, vsrc, key, &str, &n)>0) in bcf_copy_info_field()
1372 if (bcf_get_info_string(h, v, tag, &s, &n)>0) in bcf_get_info_str()
1402 if ((ret=bcf_get_info_string(h, v, tag, &s, &n))>0) in bcf_get_info_str_vec()
|
| H A D | consolidate.cpp | 561 if (bcf_get_info_string(odr->hdr, vntr_v, "MOTIF", &motif, &n_motif)>0 && in consolidate_multiallelic()
588 … if (bcf_get_info_string(odr->hdr, indel_vs[i], "GMOTIF", &gmotif, &n_gmotif)>0) in consolidate_multiallelic()
|
| H A D | merge_candidate_variants.cpp | 275 bcf_get_info_string(h, v, "SAMPLES", &SAMPLES, &no_SAMPLES) < 0 in merge_candidate_variants()
|
| H A D | fuzzy_partition.cpp | 270 if (bcf_get_info_string(h, v, "MOTIF", &motif, &n)>0) in bcf_variant2string_with_motif()
|
| H A D | decompose2.cpp | 509 int32_t ret = bcf_get_info_string(odr->hdr, v, tag, &a, &n); in decompose2()
585 int32_t ret = bcf_get_info_string(odr->hdr, v, tag, &a, &n); in decompose2()
|
| H A D | decompose.cpp | 547 int32_t ret = bcf_get_info_string(odr->hdr, v, tag, &a, &n); in decompose()
623 int32_t ret = bcf_get_info_string(odr->hdr, v, tag, &a, &n); in decompose()
|
| H A D | candidate_motif_picker.cpp | 162 if (bcf_get_info_string(variant.h, variant.v, "MOTIF", &motif, &n)>0) in set_motif_from_info_field()
|
| H A D | profile_chm1.cpp | 404 … bcf_get_info_string(presence_bcfptr[1]->h, presence_bcfptr[1]->v, "TruthStatus", &dst, &ndst); in profile_chm1()
|
| H A D | complex_genotyping_record.cpp | 113 if (bcf_get_info_string(h, v, "MOTIF", &motif, &n)>0) in ComplexGenotypingRecord()
|
| H A D | filter.cpp | 840 if (bcf_get_info_string(h, v, tag.s, &s.s, &n)>0) in evaluate()
1104 if (bcf_get_info_string(h, v, tag.s, &s.s, &n)>0) in evaluate()
|
| H A D | profile_na12878.cpp | 519 … bcf_get_info_string(presence_bcfptr[i]->h, presence_bcfptr[i]->v, "TruthStatus", &ts, &n); in profile_na12878()
|
| /dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
| H A D | vcf.h | 668 …#define bcf_get_info_string(hdr,line,tag,dst,ndst) bcf_get_info_values(hdr,line,tag,(void**)(dst),… macro
|
| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
| H A D | vcf.h | 668 …#define bcf_get_info_string(hdr,line,tag,dst,ndst) bcf_get_info_values(hdr,line,tag,(void**)(dst),… macro
|
| /dports/biology/stacks/stacks-2.4/htslib/htslib/ |
| H A D | vcf.h | 668 …#define bcf_get_info_string(hdr,line,tag,dst,ndst) bcf_get_info_values(hdr,line,tag,(void**)(dst),… macro
|
| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
| H A D | vcf.h | 668 …#define bcf_get_info_string(hdr,line,tag,dst,ndst) bcf_get_info_values(hdr,line,tag,(void**)(dst),… macro
|
| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfannotate.c | 485 return bcf_get_info_string(args->tgts_hdr,rec,col->hdr_key_src,ptr,mptr); in vcf_getter_info_str2str()
1090 nstr = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmpks.s, &mstr); in setter_ARinfo_string()
1138 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in setter_info_str()
1174 int n = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &col->mm_kstr.s, &m); in setter_info_str()
1217 …int ntmps = bcf_get_info_string(args->files->readers[1].header,rec,col->hdr_key_src,&args->tmps,&a… in vcf_setter_info_str()
1226 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in vcf_setter_info_str()
|
| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | vcfannotate.c | 485 return bcf_get_info_string(args->tgts_hdr,rec,col->hdr_key_src,ptr,mptr); in vcf_getter_info_str2str()
1090 nstr = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmpks.s, &mstr); in setter_ARinfo_string()
1138 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in setter_info_str()
1174 int n = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &col->mm_kstr.s, &m); in setter_info_str()
1217 …int ntmps = bcf_get_info_string(args->files->readers[1].header,rec,col->hdr_key_src,&args->tmps,&a… in vcf_setter_info_str()
1226 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in vcf_setter_info_str()
|
| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | vcfannotate.c | 485 return bcf_get_info_string(args->tgts_hdr,rec,col->hdr_key_src,ptr,mptr); in vcf_getter_info_str2str()
1090 nstr = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmpks.s, &mstr); in setter_ARinfo_string()
1138 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in setter_info_str()
1174 int n = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &col->mm_kstr.s, &m); in setter_info_str()
1217 …int ntmps = bcf_get_info_string(args->files->readers[1].header,rec,col->hdr_key_src,&args->tmps,&a… in vcf_setter_info_str()
1226 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in vcf_setter_info_str()
|
| H A D | vcfannotate.c.pysam.c | 487 return bcf_get_info_string(args->tgts_hdr,rec,col->hdr_key_src,ptr,mptr); in vcf_getter_info_str2str()
1092 nstr = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmpks.s, &mstr); in setter_ARinfo_string()
1140 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in setter_info_str()
1176 int n = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &col->mm_kstr.s, &m); in setter_info_str()
1219 …int ntmps = bcf_get_info_string(args->files->readers[1].header,rec,col->hdr_key_src,&args->tmps,&a… in vcf_setter_info_str()
1228 … int ret = bcf_get_info_string(args->hdr, line, col->hdr_key_dst, &args->tmps2, &args->mtmps2); in vcf_setter_info_str()
|
| /dports/biology/bcftools/bcftools-1.14/plugins/ |
| H A D | indel-stats.c | 658 if ( bcf_get_info_string(args->hdr,rec,args->csq_tag,&args->csq_str,&args->mcsq_str) > 0 ) in process_record()
|
| /dports/biology/bio-mocha/bcftools-1.14/plugins/ |
| H A D | indel-stats.c | 658 if ( bcf_get_info_string(args->hdr,rec,args->csq_tag,&args->csq_str,&args->mcsq_str) > 0 ) in process_record()
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
| H A D | vcf.h | 962 …#define bcf_get_info_string(hdr,line,tag,dst,ndst) bcf_get_info_values(hdr,line,tag,(void**)(dst),… macro
|
| /dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
| H A D | vcf.h | 963 …#define bcf_get_info_string(hdr,line,tag,dst,ndst) bcf_get_info_values(hdr,line,tag,(void**)(dst),… macro
|