/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/ |
H A D | conservation_colorer.hpp | 63 int GetProfileIndex(const UngappedAlignedBlock *block, int blockColumn) const in GetProfileIndex() 64 { return blocks.find(block)->second[blockColumn]; } in GetProfileIndex() 65 void GetProfileIndexAndResidue(const UngappedAlignedBlock *block, int blockColumn, int row, 99 const Vector *GetIdentityColor(const UngappedAlignedBlock *block, int blockColumn) in GetIdentityColor() argument 106 const Vector *GetVarietyColor(const UngappedAlignedBlock *block, int blockColumn) in GetVarietyColor() argument 109 return &(varietyColors[GetProfileIndex(block, blockColumn)]); in GetVarietyColor() 112 const Vector *GetWeightedVarietyColor(const UngappedAlignedBlock *block, int blockColumn) in GetWeightedVarietyColor() argument 115 return &(weightedVarietyColors[GetProfileIndex(block, blockColumn)]); in GetWeightedVarietyColor() 121 return &(informationContentColors[GetProfileIndex(block, blockColumn)]); in GetInformationContentColor() 124 const Vector *GetFitColor(const UngappedAlignedBlock *block, int blockColumn, int row) in GetFitColor() argument [all …]
|
H A D | conservation_colorer.cpp | 117 for (unsigned int blockColumn=0; blockColumn<b->first->width; ++blockColumn) { in CalculateBasicConservationColors() local 118 profileColumn = b->second[blockColumn]; in CalculateBasicConservationColors() 143 if (blockColumn == 0 && b == blocks.begin()) { in CalculateBasicConservationColors() 160 if (blockColumn == 0 && b == blocks.begin()) { in CalculateBasicConservationColors() 249 for (unsigned int blockColumn=0; blockColumn<b->first->width; ++blockColumn) { in CalculateFitConservationColors() local 250 profileColumn = b->second[blockColumn]; in CalculateFitConservationColors() 259 b->first->GetRangeOfRow(0)->from + blockColumn); in CalculateFitConservationColors() 260 if (blockColumn == 0 && b == blocks.begin() && p == profile.begin()) { in CalculateFitConservationColors() 417 const UngappedAlignedBlock *block, int blockColumn, int row, in GetProfileIndexAndResidue() argument 421 *profileIndex = b->second[blockColumn]; in GetProfileIndexAndResidue() [all …]
|
H A D | block_multiple_alignment.cpp | 272 blockMap[i].blockColumn = j; in UpdateBlockMapAndColors() 646 int *blockColumn, int *blockWidth) const in GetAlignedBlockPosition() argument 648 *blockColumn = *blockWidth = -1; in GetAlignedBlockPosition() 651 *blockColumn = info.blockColumn; in GetAlignedBlockPosition() 743 int blockColumn, blockWidth; in MoveBlockBoundary() local 1048 for (unsigned int blockColumn=0; blockColumn<block->width; ++blockColumn) { in OptimizeBlock() local 1110 info.block->width = info.blockColumn; in SplitBlock() 1756 unsigned int alignmentIndex, blockColumn; in GetAlignmentIndex() local 1777 for (blockColumn=0; blockColumn<block->width; ++blockColumn) { in GetAlignmentIndex() 1855 if (blockColumn < extraSpace || blockColumn >= extraSpace + rangeWidth) in GetIndexAt() [all …]
|
H A D | block_multiple_alignment.hpp | 175 …void GetAlignedBlockPosition(unsigned int alignmentIndex, int *blockColumn, int *blockWidth) const; 249 int blockColumn, alignedBlockNum; member 348 virtual int GetIndexAt(unsigned int blockColumn, unsigned int row, 397 int GetIndexAt(unsigned int blockColumn, unsigned int row, in GetIndexAt() argument 400 { return (GetRangeOfRow(row)->from + blockColumn); } in GetIndexAt() 402 char GetCharacterAt(unsigned int blockColumn, unsigned int row) const; 423 int GetIndexAt(unsigned int blockColumn, unsigned int row,
|
H A D | sequence_viewer_window.cpp | 552 unsigned int row, blockColumn, seqIndex=0; in OnHighlight() local 558 for (blockColumn=0; blockColumn<(*b)->width; ++blockColumn) { in OnHighlight() 560 seqIndex = (*b)->GetRangeOfRow(row)->from + blockColumn; in OnHighlight()
|
H A D | sequence_display.cpp | 887 int blockColumn, blockWidth; in UpdateBlockBoundaryRow() local 889 blockBoundaryRow->alignment->GetAlignedBlockPosition(i, &blockColumn, &blockWidth); in UpdateBlockBoundaryRow() 890 if (blockColumn >= 0 && blockWidth > 0) { in UpdateBlockBoundaryRow() 893 else if (blockColumn == 0) in UpdateBlockBoundaryRow() 895 else if (blockColumn == blockWidth - 1) in UpdateBlockBoundaryRow()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/struct_util/ |
H A D | su_block_multiple_alignment.cpp | 271 m_blockMap[i].blockColumn = j; in UpdateBlockMap() 397 *blockColumn = *blockWidth = eUndefined; in GetAlignedBlockPosition() 400 *blockColumn = info.blockColumn; in GetAlignedBlockPosition() 504 unsigned int blockColumn, blockWidth; in MoveBlockBoundary() local 540 else if (blockColumn == info.block->m_width - 1 && in MoveBlockBoundary() 754 info.block->m_width = info.blockColumn; in SplitBlock() 1313 unsigned int alignmentIndex, blockColumn; in GetAlignmentIndex() local 1334 for (blockColumn=0; blockColumn<block->m_width; ++blockColumn) { in GetAlignmentIndex() 1399 seqIndex = range->from + blockColumn; in GetIndexAt() 1407 if (blockColumn < extraSpace || blockColumn >= extraSpace + rangeWidth) in GetIndexAt() [all …]
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/struct_util/ |
H A D | su_block_multiple_alignment.hpp | 165 unsigned int *blockColumn, unsigned int *blockWidth) const; 224 int blockColumn, alignedBlockNum; member 279 virtual unsigned int GetIndexAt(unsigned int blockColumn, unsigned int row, 327 unsigned int GetIndexAt(unsigned int blockColumn, unsigned int row, in GetIndexAt() argument 330 { return (GetRangeOfRow(row)->from + blockColumn); } in GetIndexAt() 332 char GetCharacterAt(unsigned int blockColumn, unsigned int row) const; 353 unsigned int GetIndexAt(unsigned int blockColumn, unsigned int row,
|
/dports/lang/seed7/seed7/lib/ |
H A D | jpeg.s7i | 588 var integer: blockColumn is 0; 600 column := mcuLeftColumn + blockColumn; 611 column := mcuLeftColumn + blockColumn; 626 var integer: blockColumn is 0; 639 column := mcuLeftColumn + blockColumn; 645 column := mcuLeftColumn + blockColumn; 660 var integer: blockColumn is 0; 674 column := mcuLeftColumn + blockColumn; 680 column := mcuLeftColumn + blockColumn; 691 column := mcuLeftColumn + blockColumn; [all …]
|
/dports/devel/qtcreator/qt-creator-opensource-src-5.0.3/src/plugins/texteditor/ |
H A D | textdocument.cpp | 222 const int blockColumn = tabSettings.columnAt(text, text.size()); in indentOrUnindent() local 223 if (blockColumn < column) { in indentOrUnindent() 225 cursor.insertText(tabSettings.indentationString(blockColumn, column, 0, block)); in indentOrUnindent()
|
/dports/biology/p5-Bio-MAGETAB/Bio-MAGETAB-1.31/ |
H A D | Changes | 86 Renamed Feature blockColumn and column attributes
|
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/linear/ |
H A D | BlockRealMatrix.java | 1578 private int blockWidth(final int blockColumn) { in blockWidth() argument 1579 return (blockColumn == blockColumns - 1) ? columns - blockColumn * BLOCK_SIZE : BLOCK_SIZE; in blockWidth()
|
H A D | BlockFieldMatrix.java | 1589 private int blockWidth(final int blockColumn) { in blockWidth() argument 1590 return (blockColumn == blockColumns - 1) ? columns - blockColumn * BLOCK_SIZE : BLOCK_SIZE; in blockWidth()
|