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Searched refs:blockColumn (Results 1 – 13 of 13) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/
H A Dconservation_colorer.hpp63 int GetProfileIndex(const UngappedAlignedBlock *block, int blockColumn) const in GetProfileIndex()
64 { return blocks.find(block)->second[blockColumn]; } in GetProfileIndex()
65 void GetProfileIndexAndResidue(const UngappedAlignedBlock *block, int blockColumn, int row,
99 const Vector *GetIdentityColor(const UngappedAlignedBlock *block, int blockColumn) in GetIdentityColor() argument
106 const Vector *GetVarietyColor(const UngappedAlignedBlock *block, int blockColumn) in GetVarietyColor() argument
109 return &(varietyColors[GetProfileIndex(block, blockColumn)]); in GetVarietyColor()
112 const Vector *GetWeightedVarietyColor(const UngappedAlignedBlock *block, int blockColumn) in GetWeightedVarietyColor() argument
115 return &(weightedVarietyColors[GetProfileIndex(block, blockColumn)]); in GetWeightedVarietyColor()
121 return &(informationContentColors[GetProfileIndex(block, blockColumn)]); in GetInformationContentColor()
124 const Vector *GetFitColor(const UngappedAlignedBlock *block, int blockColumn, int row) in GetFitColor() argument
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H A Dconservation_colorer.cpp117 for (unsigned int blockColumn=0; blockColumn<b->first->width; ++blockColumn) { in CalculateBasicConservationColors() local
118 profileColumn = b->second[blockColumn]; in CalculateBasicConservationColors()
143 if (blockColumn == 0 && b == blocks.begin()) { in CalculateBasicConservationColors()
160 if (blockColumn == 0 && b == blocks.begin()) { in CalculateBasicConservationColors()
249 for (unsigned int blockColumn=0; blockColumn<b->first->width; ++blockColumn) { in CalculateFitConservationColors() local
250 profileColumn = b->second[blockColumn]; in CalculateFitConservationColors()
259 b->first->GetRangeOfRow(0)->from + blockColumn); in CalculateFitConservationColors()
260 if (blockColumn == 0 && b == blocks.begin() && p == profile.begin()) { in CalculateFitConservationColors()
417 const UngappedAlignedBlock *block, int blockColumn, int row, in GetProfileIndexAndResidue() argument
421 *profileIndex = b->second[blockColumn]; in GetProfileIndexAndResidue()
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H A Dblock_multiple_alignment.cpp272 blockMap[i].blockColumn = j; in UpdateBlockMapAndColors()
646 int *blockColumn, int *blockWidth) const in GetAlignedBlockPosition() argument
648 *blockColumn = *blockWidth = -1; in GetAlignedBlockPosition()
651 *blockColumn = info.blockColumn; in GetAlignedBlockPosition()
743 int blockColumn, blockWidth; in MoveBlockBoundary() local
1048 for (unsigned int blockColumn=0; blockColumn<block->width; ++blockColumn) { in OptimizeBlock() local
1110 info.block->width = info.blockColumn; in SplitBlock()
1756 unsigned int alignmentIndex, blockColumn; in GetAlignmentIndex() local
1777 for (blockColumn=0; blockColumn<block->width; ++blockColumn) { in GetAlignmentIndex()
1855 if (blockColumn < extraSpace || blockColumn >= extraSpace + rangeWidth) in GetIndexAt()
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H A Dblock_multiple_alignment.hpp175 …void GetAlignedBlockPosition(unsigned int alignmentIndex, int *blockColumn, int *blockWidth) const;
249 int blockColumn, alignedBlockNum; member
348 virtual int GetIndexAt(unsigned int blockColumn, unsigned int row,
397 int GetIndexAt(unsigned int blockColumn, unsigned int row, in GetIndexAt() argument
400 { return (GetRangeOfRow(row)->from + blockColumn); } in GetIndexAt()
402 char GetCharacterAt(unsigned int blockColumn, unsigned int row) const;
423 int GetIndexAt(unsigned int blockColumn, unsigned int row,
H A Dsequence_viewer_window.cpp552 unsigned int row, blockColumn, seqIndex=0; in OnHighlight() local
558 for (blockColumn=0; blockColumn<(*b)->width; ++blockColumn) { in OnHighlight()
560 seqIndex = (*b)->GetRangeOfRow(row)->from + blockColumn; in OnHighlight()
H A Dsequence_display.cpp887 int blockColumn, blockWidth; in UpdateBlockBoundaryRow() local
889 blockBoundaryRow->alignment->GetAlignedBlockPosition(i, &blockColumn, &blockWidth); in UpdateBlockBoundaryRow()
890 if (blockColumn >= 0 && blockWidth > 0) { in UpdateBlockBoundaryRow()
893 else if (blockColumn == 0) in UpdateBlockBoundaryRow()
895 else if (blockColumn == blockWidth - 1) in UpdateBlockBoundaryRow()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/struct_util/
H A Dsu_block_multiple_alignment.cpp271 m_blockMap[i].blockColumn = j; in UpdateBlockMap()
397 *blockColumn = *blockWidth = eUndefined; in GetAlignedBlockPosition()
400 *blockColumn = info.blockColumn; in GetAlignedBlockPosition()
504 unsigned int blockColumn, blockWidth; in MoveBlockBoundary() local
540 else if (blockColumn == info.block->m_width - 1 && in MoveBlockBoundary()
754 info.block->m_width = info.blockColumn; in SplitBlock()
1313 unsigned int alignmentIndex, blockColumn; in GetAlignmentIndex() local
1334 for (blockColumn=0; blockColumn<block->m_width; ++blockColumn) { in GetAlignmentIndex()
1399 seqIndex = range->from + blockColumn; in GetIndexAt()
1407 if (blockColumn < extraSpace || blockColumn >= extraSpace + rangeWidth) in GetIndexAt()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/struct_util/
H A Dsu_block_multiple_alignment.hpp165 unsigned int *blockColumn, unsigned int *blockWidth) const;
224 int blockColumn, alignedBlockNum; member
279 virtual unsigned int GetIndexAt(unsigned int blockColumn, unsigned int row,
327 unsigned int GetIndexAt(unsigned int blockColumn, unsigned int row, in GetIndexAt() argument
330 { return (GetRangeOfRow(row)->from + blockColumn); } in GetIndexAt()
332 char GetCharacterAt(unsigned int blockColumn, unsigned int row) const;
353 unsigned int GetIndexAt(unsigned int blockColumn, unsigned int row,
/dports/lang/seed7/seed7/lib/
H A Djpeg.s7i588 var integer: blockColumn is 0;
600 column := mcuLeftColumn + blockColumn;
611 column := mcuLeftColumn + blockColumn;
626 var integer: blockColumn is 0;
639 column := mcuLeftColumn + blockColumn;
645 column := mcuLeftColumn + blockColumn;
660 var integer: blockColumn is 0;
674 column := mcuLeftColumn + blockColumn;
680 column := mcuLeftColumn + blockColumn;
691 column := mcuLeftColumn + blockColumn;
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/dports/devel/qtcreator/qt-creator-opensource-src-5.0.3/src/plugins/texteditor/
H A Dtextdocument.cpp222 const int blockColumn = tabSettings.columnAt(text, text.size()); in indentOrUnindent() local
223 if (blockColumn < column) { in indentOrUnindent()
225 cursor.insertText(tabSettings.indentationString(blockColumn, column, 0, block)); in indentOrUnindent()
/dports/biology/p5-Bio-MAGETAB/Bio-MAGETAB-1.31/
H A DChanges86 Renamed Feature blockColumn and column attributes
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/linear/
H A DBlockRealMatrix.java1578 private int blockWidth(final int blockColumn) { in blockWidth() argument
1579 return (blockColumn == blockColumns - 1) ? columns - blockColumn * BLOCK_SIZE : BLOCK_SIZE; in blockWidth()
H A DBlockFieldMatrix.java1589 private int blockWidth(final int blockColumn) { in blockWidth() argument
1590 return (blockColumn == blockColumns - 1) ? columns - blockColumn * BLOCK_SIZE : BLOCK_SIZE; in blockWidth()