Searched refs:bothEnds (Results 1 – 3 of 3) sorted by relevance
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelsetbio/ |
| H A D | BioExt.java | 129 boolean bothEnds, boolean isDraw, boolean addHeader, in getPdbData() argument
212 bothEnds = false;//&= !isDraw && !isRamachandran; in getPdbData()
213 for (int j = 0; j < (bothEnds ? 2 : 1); j++, factor *= -1) in getPdbData()
628 boolean bothEnds = false; in getPdbDataM()
642 bothEnds = true; //??? in getPdbDataM()
658 bsSelected, bothEnds, isDraw, p == 0, tokens, out, pdbCONECT, in getPdbDataM()
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| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
| H A D | FASTQWorkersLibrary.cpp | 387 bool bothEnds = settings.customParameters.value(BOTH_ID, false).toInt(); in runStep() local
399 … const U2Region acceptedRegion = DNASequenceUtils::trimByQuality(dna, quality, minLen, bothEnds); in runStep()
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| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | Read.java | 624 public boolean isDuplicateByMapping(Read r, boolean bothEnds, boolean checkAlignment){ in isDuplicateByMapping() argument
626 return isDuplicateByMappingDifferentLength(r, bothEnds, checkAlignment); in isDuplicateByMapping()
629 assert(!bothEnds || bases.length==r.length()); in isDuplicateByMapping()
640 if(bothEnds){ in isDuplicateByMapping()
666 …public boolean isDuplicateByMappingDifferentLength(Read r, boolean bothEnds, boolean checkAlignmen… in isDuplicateByMappingDifferentLength() argument
669 if(bothEnds){return false;} in isDuplicateByMappingDifferentLength()
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