| /dports/science/cdk/cdk-cdk-2.3/descriptor/fingerprint/src/test/java/org/openscience/cdk/fingerprint/ |
| H A D | AtomPairs2DFingerprintTest.java | 36 Assert.assertEquals(9, bsfp.cardinality()); in testFingerprint()
37 Assert.assertEquals(true, bsfp.get(0)); //Distance 1 in testFingerprint()
38 Assert.assertEquals(true, bsfp.get(78)); //Distance 2 in testFingerprint()
39 Assert.assertEquals(true, bsfp.get(156)); //Distance 3 in testFingerprint()
40 Assert.assertEquals(true, bsfp.get(234)); //Distance 4 in testFingerprint()
41 Assert.assertEquals(true, bsfp.get(312)); //Distance 5 in testFingerprint()
42 Assert.assertEquals(true, bsfp.get(390)); //Distance 6 in testFingerprint()
43 Assert.assertEquals(true, bsfp.get(468)); //Distance 7 in testFingerprint()
44 Assert.assertEquals(true, bsfp.get(546)); //Distance 8 in testFingerprint()
45 Assert.assertEquals(true, bsfp.get(624)); //Distance 9 in testFingerprint()
[all …]
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| /dports/science/rdkit/rdkit-Release_2021_03_5/Code/PgSQL/rdkit/ |
| H A D | sfp_op.c | 92 CSfp asfp, bsfp; in sfp_tanimoto_sml() local
104 NULL, &bsfp, NULL); in sfp_tanimoto_sml()
115 CSfp asfp, bsfp; in sfp_tanimoto_sml_op() local
127 NULL, &bsfp, NULL); in sfp_tanimoto_sml_op()
139 CSfp asfp, bsfp; in sfp_dice_sml() local
151 NULL, &bsfp, NULL); in sfp_dice_sml()
162 CSfp asfp, bsfp; in sfp_dice_sml_op() local
174 NULL, &bsfp, NULL); in sfp_dice_sml_op()
262 CSfp asfp, bsfp; in sfp_add() local
277 fp = addSFP(asfp, bsfp); in sfp_add()
[all …]
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| /dports/biology/ncbi-toolkit/ncbi/cn3d/ |
| H A D | cn3dsave.c | 207 BiostrucFeature *bsfp; in Cn3D_AddMatrix() local
216 if(bsfp == NULL) { in Cn3D_AddMatrix()
220 if(bsfp == NULL) return; in Cn3D_AddMatrix()
221 bsfsp->features = bsfp; in Cn3D_AddMatrix()
898 BiostrucFeaturePtr bsfp; in Cn3D_MakeBSFSPFromARS() local
904 bsfp = BiostrucFeatureNew(); in Cn3D_MakeBSFSPFromARS()
905 if (!bsfp || !bsfp) return NULL; in Cn3D_MakeBSFSPFromARS()
912 bsfsp->features = bsfp; in Cn3D_MakeBSFSPFromARS()
915 bsfp->id = 0; in Cn3D_MakeBSFSPFromARS()
916 bsfp->name = NULL; in Cn3D_MakeBSFSPFromARS()
[all …]
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| H A D | cn3dshim.c | 322 BiostrucFeature *bsfp; in Cn3D_FindFeature() local
326 for(bsfp = bsfsp->features; bsfp != NULL; bsfp = bsfp->next) { in Cn3D_FindFeature()
327 if(bsfp->type == type) { in Cn3D_FindFeature()
329 if(i >= num) return bsfp; in Cn3D_FindFeature()
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| H A D | cn3dstyl.c | 2124 BiostrucFeaturePtr bsfp = NULL; in MakeBiostrucFeatureSetForUserDefinedFeature() local
2133 bsfp = BiostrucFeatureNew(); in MakeBiostrucFeatureSetForUserDefinedFeature()
2134 if (!bsfp) return NULL; in MakeBiostrucFeatureSetForUserDefinedFeature()
2135 bsfp->name = StringSave(sfipThis->name); in MakeBiostrucFeatureSetForUserDefinedFeature()
2136 bsfp->type = Feature_type_other; in MakeBiostrucFeatureSetForUserDefinedFeature()
2137 bsfp->Location_location = CopyLocation(pvnLoc); in MakeBiostrucFeatureSetForUserDefinedFeature()
2139 bsfp->Property_property = in MakeBiostrucFeatureSetForUserDefinedFeature()
2145 bsfsp->features = bsfp; in MakeBiostrucFeatureSetForUserDefinedFeature()
2498 BiostrucFeaturePtr bsfp = bsfsp->features; in Cn3DIndexUserDefinedFeatureForMSD() local
2501 sfipThis->name = StringSave(bsfp->name); in Cn3DIndexUserDefinedFeatureForMSD()
[all …]
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| H A D | cn3dopen.c | 787 BiostrucFeaturePtr bsfp; in Cn3D_OpenEnd() local
841 bsfp = Cn3D_FindFeature(pmsdMaster->pbsBS->features, in Cn3D_OpenEnd()
844 if(bsfp != NULL) { in Cn3D_OpenEnd()
845 camera = (Camera *)bsfp->Property_property->data.ptrvalue; in Cn3D_OpenEnd()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/ |
| H A D | prunebsc.c | 220 BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL; in PruneFeatureSet() local
230 bsfp = bsfsp->features; in PruneFeatureSet()
232 while (bsfp) in PruneFeatureSet()
234 cgpp = (ChemGraphPntrsPtr)bsfp->Location_location->data.ptrvalue; in PruneFeatureSet()
242 pbsfs->features = bsfp; in PruneFeatureSet()
244 bsfp = bsfp->next; in PruneFeatureSet()
249 bsfpnew->next = bsfp; in PruneFeatureSet()
250 bsfpnew = bsfp; in PruneFeatureSet()
251 bsfp = bsfp->next; in PruneFeatureSet()
257 bsfpDie = bsfp; in PruneFeatureSet()
[all …]
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| H A D | mkbioseq_vs.c | 209 BiostrucFeaturePtr bsfp; in MakeBioseqs() local
307 for (bsfp = bsfsp->features; bsfp; bsfp = bsfp->next) in MakeBioseqs()
309 cgpp = (ChemGraphPntrsPtr)bsfp->Location_location->data.ptrvalue; in MakeBioseqs()
318 …current_bioseq->annot = AddSecDomToSeqAnnot(bsfp, feature_name, current_bioseq->annot, current_bio… in MakeBioseqs()
320 …current_bioseq->annot = AddSecDomToSeqAnnot(bsfp, feature_name, NULL, current_bioseq->id, DomainNu… in MakeBioseqs()
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| H A D | mkbioseqA.c | 581 SeqAnnotPtr LIBCALL AddSecDomToSeqAnnot(BiostrucFeaturePtr bsfp, CharPtr name, SeqAnnotPtr seq_anno… in AddSecDomToSeqAnnot() argument
595 if (bsfp == NULL) return seq_annot; in AddSecDomToSeqAnnot()
611 cgpp = (ChemGraphPntrsPtr)bsfp->Location_location->data.ptrvalue; in AddSecDomToSeqAnnot()
631 sfp->data.value.intvalue = bsfp->type; in AddSecDomToSeqAnnot()
632 sfp->comment = StringSave(bsfp->name); in AddSecDomToSeqAnnot()
637 tmp = MemNew(StringLen(bsfp->name) + sizeof(domnum)); in AddSecDomToSeqAnnot()
639 StringCpy(tmp, bsfp->name); in AddSecDomToSeqAnnot()
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| H A D | mkbioseq.h | 73 SeqAnnotPtr LIBCALL AddSecDomToSeqAnnot PROTO((BiostrucFeaturePtr bsfp, CharPtr name, SeqAnnotPtr s…
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/newvast/ |
| H A D | mkbioseq_vs.c | 212 BiostrucFeaturePtr bsfp; in MakeBioseqs() local
310 for (bsfp = bsfsp->features; bsfp; bsfp = bsfp->next) in MakeBioseqs()
312 cgpp = (ChemGraphPntrsPtr)bsfp->Location_location->data.ptrvalue; in MakeBioseqs()
321 …current_bioseq->annot = AddSecDomToSeqAnnot(bsfp, feature_name, current_bioseq->annot, current_bio… in MakeBioseqs()
323 …current_bioseq->annot = AddSecDomToSeqAnnot(bsfp, feature_name, NULL, current_bioseq->id, DomainNu… in MakeBioseqs()
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| H A D | mkbioseqA.c | 590 SeqAnnotPtr LIBCALL AddSecDomToSeqAnnot(BiostrucFeaturePtr bsfp, CharPtr name, SeqAnnotPtr seq_anno… in AddSecDomToSeqAnnot() argument
604 if (bsfp == NULL) return seq_annot; in AddSecDomToSeqAnnot()
620 cgpp = (ChemGraphPntrsPtr)bsfp->Location_location->data.ptrvalue; in AddSecDomToSeqAnnot()
640 sfp->data.value.intvalue = bsfp->type; in AddSecDomToSeqAnnot()
641 sfp->comment = StringSave(bsfp->name); in AddSecDomToSeqAnnot()
646 tmp = MemNew(StringLen(bsfp->name) + sizeof(domnum)); in AddSecDomToSeqAnnot()
648 StringCpy(tmp, bsfp->name); in AddSecDomToSeqAnnot()
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| /dports/audio/sphinx3/sphinx3-0.8/src/libs3decoder/libsearch/ |
| H A D | srch.c | 555 FILE *bsfp;
559 if ((bsfp = fopen_comp(str, "w", &ispipe)) == NULL)
562 write_bstsenscr(bsfp, s->stat->nfr, s->ascale);
563 fclose_comp(bsfp, ispipe);
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin3.c | 13105 if (bsfp != NULL) {
13106 Hide (bsfp->form);
13107 bssp = bsfp->bssp;
13149 if (bsfp != NULL) { in CreateBioseqSetEditForm()
13155 bsfp->bssp = bssp; in CreateBioseqSetEditForm()
13161 SetObjectExtra (bsfp->class_control, bsfp, NULL); in CreateBioseqSetEditForm()
13186 if (bsfp != NULL) { in DoApplySetType()
13187 Hide (bsfp->form); in DoApplySetType()
13188 bssp = bsfp->bssp; in DoApplySetType()
13214 if (bsfp != NULL) { in ApplySetTypeToInnerSets()
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| /dports/sysutils/xvidcap/xvidcap-1.1.7/ffmpeg/ |
| H A D | ffmpeg.c | 3745 AVBitStreamFilterContext **bsfp; in opt_bsf() local
3752 bsfp= *opt == 'v' ? &video_bitstream_filters : in opt_bsf()
3755 while(*bsfp) in opt_bsf()
3756 bsfp= &(*bsfp)->next; in opt_bsf()
3758 *bsfp= bsfc; in opt_bsf()
|