Searched refs:buildMarkerSet (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/checkm/CheckM-1.0.18/scripts/ |
| H A D | simTiming.py | 85 markerSet = self.markerSetBuilder.buildMarkerSet(bacteriaIds, 0.97, 0.97)
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| H A D | qcGenomes.py | 111 …markerSet = markerSetBuilder.buildMarkerSet(finishedGenomes[lineage], ubiquityThreshold, singleCop…
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| H A D | createTaxonomicSpecificMarkerSets.py | 65 …markerSet = markerSetBuilder.buildMarkerSet(genomeIds, ubiquityThreshold, singleCopyThreshold, col…
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| /dports/biology/checkm/CheckM-1.0.18/scripts/genometreeworkflow/ |
| H A D | markerSetBuilder.py | 564 …def buildMarkerSet(self, genomeIds, ubiquityThreshold, singleCopyThreshold, spacingBetweenContigs … member in MarkerSetBuilder
620 … markerSet = self.buildMarkerSet(genomeIds, ubiquityThreshold, singleCopyThreshold)
673 … markerSet = self.buildMarkerSet(genomeIds, ubiquityThreshold, singleCopyThreshold)
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| H A D | decorateTree.py | 66 …markerSet = self.markerSetBuilder.buildMarkerSet(genomeIds, ubiquityThreshold, singleCopyThreshold)
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