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Searched refs:cPar (Results 1 – 25 of 177) sorted by relevance

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/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma.cpp1753 ReadFile_kin(cPar.file_kin, cPar.indicator_idv, cPar.mapID2num, cPar.k_mode, in BatchRun()
1760 ReadFile_kin(cPar.file_kin, cPar.indicator_cvt, cPar.mapID2num, cPar.k_mode, in BatchRun()
1824 cPar.em_prec, cPar.nr_prec, cPar.l_min, cPar.l_max, in BatchRun()
2171 cPar.ni_study, cPar.v_pve, cPar.v_se_pve, cPar.pve_total, in BatchRun()
2203 cPar.ni_study, cPar.v_pve, cPar.v_se_pve, cPar.pve_total, in BatchRun()
2248 cPar.n_vc = cPar.n_vc - 1; in BatchRun()
2295 cPar.v_pve, cPar.v_se_pve, cPar.pve_total, cPar.se_pve_total, in BatchRun()
2296 cPar.v_sigma2, cPar.v_se_sigma2, cPar.v_enrich, in BatchRun()
2483 BimbamXwz(cPar.file_geno, cPar.d_pace, cPar.indicator_idv, in BatchRun()
2534 cPar.v_se_pve, cPar.pve_total, cPar.se_pve_total, cPar.v_sigma2, in BatchRun()
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H A Dldr.cpp50 a_mode = cPar.a_mode; in CopyFromParam()
51 d_pace = cPar.d_pace; in CopyFromParam()
54 file_geno = cPar.file_geno; in CopyFromParam()
55 file_out = cPar.file_out; in CopyFromParam()
56 path_out = cPar.path_out; in CopyFromParam()
58 ni_total = cPar.ni_total; in CopyFromParam()
59 ns_total = cPar.ns_total; in CopyFromParam()
60 ni_test = cPar.ni_test; in CopyFromParam()
61 ns_test = cPar.ns_test; in CopyFromParam()
62 n_cvt = cPar.n_cvt; in CopyFromParam()
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H A Dmain.cpp30 PARAM cPar; in main() local
57 cGemma.Assign(argc, argv, cPar); in main()
59 ifstream check_dir((cPar.path_out).c_str()); in main()
62 mkdir((cPar.path_out).c_str()); in main()
64 mkdir((cPar.path_out).c_str(), S_IRWXU | S_IRGRP | S_IROTH); in main()
71 if (cPar.error == true) { in main()
80 cPar.CheckParam(); in main()
82 if (cPar.error == true) { in main()
86 cGemma.BatchRun(cPar); in main()
88 if (cPar.error == true) { in main()
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H A Dprdt.cpp43 a_mode = cPar.a_mode; in CopyFromParam()
44 d_pace = cPar.d_pace; in CopyFromParam()
47 file_geno = cPar.file_geno; in CopyFromParam()
48 file_out = cPar.file_out; in CopyFromParam()
49 path_out = cPar.path_out; in CopyFromParam()
55 snpInfo = cPar.snpInfo; in CopyFromParam()
60 n_ph = cPar.n_ph; in CopyFromParam()
61 np_obs = cPar.np_obs; in CopyFromParam()
62 np_miss = cPar.np_miss; in CopyFromParam()
63 ns_total = cPar.ns_total; in CopyFromParam()
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H A Dvarcov.cpp49 d_pace = cPar.d_pace; in CopyFromParam()
51 file_bfile = cPar.file_bfile; in CopyFromParam()
52 file_geno = cPar.file_geno; in CopyFromParam()
53 file_out = cPar.file_out; in CopyFromParam()
54 path_out = cPar.path_out; in CopyFromParam()
58 window_cm = cPar.window_cm; in CopyFromParam()
59 window_bp = cPar.window_bp; in CopyFromParam()
60 window_ns = cPar.window_ns; in CopyFromParam()
62 indicator_idv = cPar.indicator_idv; in CopyFromParam()
64 snpInfo = cPar.snpInfo; in CopyFromParam()
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H A Dlm.cpp50 a_mode = cPar.a_mode; in CopyFromParam()
51 d_pace = cPar.d_pace; in CopyFromParam()
55 file_out = cPar.file_out; in CopyFromParam()
56 path_out = cPar.path_out; in CopyFromParam()
61 ni_total = cPar.ni_total; in CopyFromParam()
62 ns_total = cPar.ns_total; in CopyFromParam()
63 ni_test = cPar.ni_test; in CopyFromParam()
64 ns_test = cPar.ns_test; in CopyFromParam()
65 n_cvt = cPar.n_cvt; in CopyFromParam()
72 snpInfo = cPar.snpInfo; in CopyFromParam()
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H A Dbslmm.cpp51 a_mode = cPar.a_mode; in CopyFromParam()
52 d_pace = cPar.d_pace; in CopyFromParam()
59 l_min = cPar.h_min; in CopyFromParam()
60 l_max = cPar.h_max; in CopyFromParam()
69 h_min = cPar.h_min; in CopyFromParam()
70 h_max = cPar.h_max; in CopyFromParam()
79 s_min = cPar.s_min; in CopyFromParam()
80 s_max = cPar.s_max; in CopyFromParam()
85 n_mh = cPar.n_mh; in CopyFromParam()
88 gsl_r = cPar.gsl_r; in CopyFromParam()
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H A Dbslmmdap.cpp53 file_out = cPar.file_out; in CopyFromParam()
54 path_out = cPar.path_out; in CopyFromParam()
59 h_min = cPar.h_min; in CopyFromParam()
60 h_max = cPar.h_max; in CopyFromParam()
61 h_ngrid = cPar.h_ngrid; in CopyFromParam()
62 rho_min = cPar.rho_min; in CopyFromParam()
63 rho_max = cPar.rho_max; in CopyFromParam()
79 trace_G = cPar.trace_G; in CopyFromParam()
83 ni_test = cPar.ni_test; in CopyFromParam()
84 ns_test = cPar.ns_test; in CopyFromParam()
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H A Dgemma.h62 void Assign(int argc, char **argv, PARAM &cPar);
63 void BatchRun(PARAM &cPar);
64 void WriteLog(int argc, char **argv, PARAM &cPar);
H A Dldr.h62 void CopyFromParam(PARAM &cPar);
63 void CopyToParam(PARAM &cPar);
H A Dvarcov.h52 void CopyFromParam(PARAM &cPar);
53 void CopyToParam(PARAM &cPar);
H A Dprdt.h57 void CopyFromParam(PARAM &cPar);
58 void CopyToParam(PARAM &cPar);
H A Dlm.h65 void CopyFromParam(PARAM &cPar);
66 void CopyToParam(PARAM &cPar);
H A Dvc.cpp60 a_mode = cPar.a_mode; in CopyFromParam()
62 file_cat = cPar.file_cat; in CopyFromParam()
64 file_cor = cPar.file_cor; in CopyFromParam()
66 setSnps = cPar.setSnps; in CopyFromParam()
78 ns_test = cPar.ns_test; in CopyFromParam()
80 crt = cPar.crt; in CopyFromParam()
85 n_vc = cPar.n_vc; in CopyFromParam()
94 cPar.v_pve = v_pve; in CopyToParam()
102 cPar.v_beta = v_beta; in CopyToParam()
107 cPar.ns_test = ns_test; in CopyToParam()
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H A Dmvlmm.h79 void CopyFromParam(PARAM &cPar);
80 void CopyToParam(PARAM &cPar);
H A Dbslmmdap.h77 void CopyFromParam(PARAM &cPar);
78 void CopyToParam(PARAM &cPar);
H A Dlmm.cpp54 a_mode = cPar.a_mode; in CopyFromParam()
55 d_pace = cPar.d_pace; in CopyFromParam()
59 file_out = cPar.file_out; in CopyFromParam()
60 path_out = cPar.path_out; in CopyFromParam()
63 l_min = cPar.l_min; in CopyFromParam()
64 l_max = cPar.l_max; in CopyFromParam()
74 ni_test = cPar.ni_test; in CopyFromParam()
75 ns_test = cPar.ns_test; in CopyFromParam()
76 n_cvt = cPar.n_cvt; in CopyFromParam()
83 snpInfo = cPar.snpInfo; in CopyFromParam()
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H A Dlmm.h93 void CopyFromParam(PARAM &cPar);
94 void CopyToParam(PARAM &cPar);
H A Dvc.h81 void CopyFromParam(PARAM &cPar);
82 void CopyToParam(PARAM &cPar);
H A Dmvlmm.cpp52 a_mode = cPar.a_mode; in CopyFromParam()
53 d_pace = cPar.d_pace; in CopyFromParam()
60 l_min = cPar.l_min; in CopyFromParam()
61 l_max = cPar.l_max; in CopyFromParam()
63 p_nr = cPar.p_nr; in CopyFromParam()
64 em_iter = cPar.em_iter; in CopyFromParam()
65 nr_iter = cPar.nr_iter; in CopyFromParam()
66 em_prec = cPar.em_prec; in CopyFromParam()
68 crt = cPar.crt; in CopyFromParam()
82 n_cvt = cPar.n_cvt; in CopyFromParam()
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H A Dbslmm.h97 void CopyFromParam(PARAM &cPar);
98 void CopyToParam(PARAM &cPar);
/dports/graphics/pixie/Pixie/src/sdrc/
H A Dsdr.cpp345 CParameter *cPar; in getFunction() local
355 …for (cPar = cFun->parameters->first(), cArg = args->first(); cPar != NULL; cPar = cFun->parameters… in getFunction()
358 if ((cPar->type & SLC_TYPE_MASK) & (cArg->type & SLC_TYPE_MASK)) { in getFunction()
361 if (cPar->type & SLC_VECTOR) { in getFunction()
399 if (cPar == NULL) return cFun; in getFunction()
404 CParameter *cPar; in getFunction() local
413 …for (cPar = cFun->parameters->first(), cArg = args->first(); cPar != NULL; cPar = cFun->parameters… in getFunction()
417 if ((cPar->type & SLC_VECTOR) && (cArg->type & SLC_FLOAT)) continue; in getFunction()
418 if ((cPar->type & SLC_MATRIX) && (cArg->type & SLC_FLOAT)) continue; in getFunction()
419 if ((cPar->type & SLC_MATRIX) && (cArg->type & SLC_VECTOR)) continue; in getFunction()
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/dports/security/pkcs11-tools/pkcs11-tools-2.5.0/lib/
H A Dpkcs11_peekpoke.c92 int cPar; in pkcs11_adjust_des_key_parity() local
97 cPar = 0; in pkcs11_adjust_des_key_parity()
100 cPar = !cPar; in pkcs11_adjust_des_key_parity()
102 if(!cPar) in pkcs11_adjust_des_key_parity()
/dports/games/openclonk/openclonk-release-8.1-src/src/script/
H A DC4Script.cpp32 int cPar=0; in FnStringFormat() local
56 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat()
57 StringBuf.AppendFormat(szField, Pars[cPar++].getInt()); in FnStringFormat()
64 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat()
65 StringBuf.AppendCharacter(Pars[cPar++].getInt()); in FnStringFormat()
74 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat()
75 StringBuf.Append(static_cast<const StdStrBuf&>(Pars[cPar++].GetDataString(10))); in FnStringFormat()
83 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat()
85 if (Pars[cPar].GetData()) in FnStringFormat()
87 C4String * pStr = Pars[cPar].getStr(); in FnStringFormat()
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/dports/textproc/sonic/sonic-1.3.0/cargo-crates/librocksdb-sys-6.7.4/zstd/lib/compress/
H A Dzstd_compress.c622 assert(ZSTD_checkCParams(cPar)==0); in ZSTD_adjustCParams_internal()
636 if (cPar.windowLog > srcLog) cPar.windowLog = srcLog; in ZSTD_adjustCParams_internal()
638 if (cPar.hashLog > cPar.windowLog) cPar.hashLog = cPar.windowLog; in ZSTD_adjustCParams_internal()
639 { U32 const cycleLog = ZSTD_cycleLog(cPar.chainLog, cPar.strategy); in ZSTD_adjustCParams_internal()
640 if (cycleLog > cPar.windowLog) in ZSTD_adjustCParams_internal()
641 cPar.chainLog -= (cycleLog - cPar.windowLog); in ZSTD_adjustCParams_internal()
644 if (cPar.windowLog < ZSTD_WINDOWLOG_ABSOLUTEMIN) in ZSTD_adjustCParams_internal()
645 cPar.windowLog = ZSTD_WINDOWLOG_ABSOLUTEMIN; /* required for frame header */ in ZSTD_adjustCParams_internal()
647 return cPar; in ZSTD_adjustCParams_internal()
652 cPar = ZSTD_clampCParams(cPar); in ZSTD_adjustCParams()
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