/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | gemma.cpp | 1753 ReadFile_kin(cPar.file_kin, cPar.indicator_idv, cPar.mapID2num, cPar.k_mode, in BatchRun() 1760 ReadFile_kin(cPar.file_kin, cPar.indicator_cvt, cPar.mapID2num, cPar.k_mode, in BatchRun() 1824 cPar.em_prec, cPar.nr_prec, cPar.l_min, cPar.l_max, in BatchRun() 2171 cPar.ni_study, cPar.v_pve, cPar.v_se_pve, cPar.pve_total, in BatchRun() 2203 cPar.ni_study, cPar.v_pve, cPar.v_se_pve, cPar.pve_total, in BatchRun() 2248 cPar.n_vc = cPar.n_vc - 1; in BatchRun() 2295 cPar.v_pve, cPar.v_se_pve, cPar.pve_total, cPar.se_pve_total, in BatchRun() 2296 cPar.v_sigma2, cPar.v_se_sigma2, cPar.v_enrich, in BatchRun() 2483 BimbamXwz(cPar.file_geno, cPar.d_pace, cPar.indicator_idv, in BatchRun() 2534 cPar.v_se_pve, cPar.pve_total, cPar.se_pve_total, cPar.v_sigma2, in BatchRun() [all …]
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H A D | ldr.cpp | 50 a_mode = cPar.a_mode; in CopyFromParam() 51 d_pace = cPar.d_pace; in CopyFromParam() 54 file_geno = cPar.file_geno; in CopyFromParam() 55 file_out = cPar.file_out; in CopyFromParam() 56 path_out = cPar.path_out; in CopyFromParam() 58 ni_total = cPar.ni_total; in CopyFromParam() 59 ns_total = cPar.ns_total; in CopyFromParam() 60 ni_test = cPar.ni_test; in CopyFromParam() 61 ns_test = cPar.ns_test; in CopyFromParam() 62 n_cvt = cPar.n_cvt; in CopyFromParam() [all …]
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H A D | main.cpp | 30 PARAM cPar; in main() local 57 cGemma.Assign(argc, argv, cPar); in main() 59 ifstream check_dir((cPar.path_out).c_str()); in main() 62 mkdir((cPar.path_out).c_str()); in main() 64 mkdir((cPar.path_out).c_str(), S_IRWXU | S_IRGRP | S_IROTH); in main() 71 if (cPar.error == true) { in main() 80 cPar.CheckParam(); in main() 82 if (cPar.error == true) { in main() 86 cGemma.BatchRun(cPar); in main() 88 if (cPar.error == true) { in main() [all …]
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H A D | prdt.cpp | 43 a_mode = cPar.a_mode; in CopyFromParam() 44 d_pace = cPar.d_pace; in CopyFromParam() 47 file_geno = cPar.file_geno; in CopyFromParam() 48 file_out = cPar.file_out; in CopyFromParam() 49 path_out = cPar.path_out; in CopyFromParam() 55 snpInfo = cPar.snpInfo; in CopyFromParam() 60 n_ph = cPar.n_ph; in CopyFromParam() 61 np_obs = cPar.np_obs; in CopyFromParam() 62 np_miss = cPar.np_miss; in CopyFromParam() 63 ns_total = cPar.ns_total; in CopyFromParam() [all …]
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H A D | varcov.cpp | 49 d_pace = cPar.d_pace; in CopyFromParam() 51 file_bfile = cPar.file_bfile; in CopyFromParam() 52 file_geno = cPar.file_geno; in CopyFromParam() 53 file_out = cPar.file_out; in CopyFromParam() 54 path_out = cPar.path_out; in CopyFromParam() 58 window_cm = cPar.window_cm; in CopyFromParam() 59 window_bp = cPar.window_bp; in CopyFromParam() 60 window_ns = cPar.window_ns; in CopyFromParam() 62 indicator_idv = cPar.indicator_idv; in CopyFromParam() 64 snpInfo = cPar.snpInfo; in CopyFromParam() [all …]
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H A D | lm.cpp | 50 a_mode = cPar.a_mode; in CopyFromParam() 51 d_pace = cPar.d_pace; in CopyFromParam() 55 file_out = cPar.file_out; in CopyFromParam() 56 path_out = cPar.path_out; in CopyFromParam() 61 ni_total = cPar.ni_total; in CopyFromParam() 62 ns_total = cPar.ns_total; in CopyFromParam() 63 ni_test = cPar.ni_test; in CopyFromParam() 64 ns_test = cPar.ns_test; in CopyFromParam() 65 n_cvt = cPar.n_cvt; in CopyFromParam() 72 snpInfo = cPar.snpInfo; in CopyFromParam() [all …]
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H A D | bslmm.cpp | 51 a_mode = cPar.a_mode; in CopyFromParam() 52 d_pace = cPar.d_pace; in CopyFromParam() 59 l_min = cPar.h_min; in CopyFromParam() 60 l_max = cPar.h_max; in CopyFromParam() 69 h_min = cPar.h_min; in CopyFromParam() 70 h_max = cPar.h_max; in CopyFromParam() 79 s_min = cPar.s_min; in CopyFromParam() 80 s_max = cPar.s_max; in CopyFromParam() 85 n_mh = cPar.n_mh; in CopyFromParam() 88 gsl_r = cPar.gsl_r; in CopyFromParam() [all …]
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H A D | bslmmdap.cpp | 53 file_out = cPar.file_out; in CopyFromParam() 54 path_out = cPar.path_out; in CopyFromParam() 59 h_min = cPar.h_min; in CopyFromParam() 60 h_max = cPar.h_max; in CopyFromParam() 61 h_ngrid = cPar.h_ngrid; in CopyFromParam() 62 rho_min = cPar.rho_min; in CopyFromParam() 63 rho_max = cPar.rho_max; in CopyFromParam() 79 trace_G = cPar.trace_G; in CopyFromParam() 83 ni_test = cPar.ni_test; in CopyFromParam() 84 ns_test = cPar.ns_test; in CopyFromParam() [all …]
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H A D | gemma.h | 62 void Assign(int argc, char **argv, PARAM &cPar); 63 void BatchRun(PARAM &cPar); 64 void WriteLog(int argc, char **argv, PARAM &cPar);
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H A D | ldr.h | 62 void CopyFromParam(PARAM &cPar); 63 void CopyToParam(PARAM &cPar);
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H A D | varcov.h | 52 void CopyFromParam(PARAM &cPar); 53 void CopyToParam(PARAM &cPar);
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H A D | prdt.h | 57 void CopyFromParam(PARAM &cPar); 58 void CopyToParam(PARAM &cPar);
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H A D | lm.h | 65 void CopyFromParam(PARAM &cPar); 66 void CopyToParam(PARAM &cPar);
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H A D | vc.cpp | 60 a_mode = cPar.a_mode; in CopyFromParam() 62 file_cat = cPar.file_cat; in CopyFromParam() 64 file_cor = cPar.file_cor; in CopyFromParam() 66 setSnps = cPar.setSnps; in CopyFromParam() 78 ns_test = cPar.ns_test; in CopyFromParam() 80 crt = cPar.crt; in CopyFromParam() 85 n_vc = cPar.n_vc; in CopyFromParam() 94 cPar.v_pve = v_pve; in CopyToParam() 102 cPar.v_beta = v_beta; in CopyToParam() 107 cPar.ns_test = ns_test; in CopyToParam() [all …]
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H A D | mvlmm.h | 79 void CopyFromParam(PARAM &cPar); 80 void CopyToParam(PARAM &cPar);
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H A D | bslmmdap.h | 77 void CopyFromParam(PARAM &cPar); 78 void CopyToParam(PARAM &cPar);
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H A D | lmm.cpp | 54 a_mode = cPar.a_mode; in CopyFromParam() 55 d_pace = cPar.d_pace; in CopyFromParam() 59 file_out = cPar.file_out; in CopyFromParam() 60 path_out = cPar.path_out; in CopyFromParam() 63 l_min = cPar.l_min; in CopyFromParam() 64 l_max = cPar.l_max; in CopyFromParam() 74 ni_test = cPar.ni_test; in CopyFromParam() 75 ns_test = cPar.ns_test; in CopyFromParam() 76 n_cvt = cPar.n_cvt; in CopyFromParam() 83 snpInfo = cPar.snpInfo; in CopyFromParam() [all …]
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H A D | lmm.h | 93 void CopyFromParam(PARAM &cPar); 94 void CopyToParam(PARAM &cPar);
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H A D | vc.h | 81 void CopyFromParam(PARAM &cPar); 82 void CopyToParam(PARAM &cPar);
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H A D | mvlmm.cpp | 52 a_mode = cPar.a_mode; in CopyFromParam() 53 d_pace = cPar.d_pace; in CopyFromParam() 60 l_min = cPar.l_min; in CopyFromParam() 61 l_max = cPar.l_max; in CopyFromParam() 63 p_nr = cPar.p_nr; in CopyFromParam() 64 em_iter = cPar.em_iter; in CopyFromParam() 65 nr_iter = cPar.nr_iter; in CopyFromParam() 66 em_prec = cPar.em_prec; in CopyFromParam() 68 crt = cPar.crt; in CopyFromParam() 82 n_cvt = cPar.n_cvt; in CopyFromParam() [all …]
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H A D | bslmm.h | 97 void CopyFromParam(PARAM &cPar); 98 void CopyToParam(PARAM &cPar);
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/dports/graphics/pixie/Pixie/src/sdrc/ |
H A D | sdr.cpp | 345 CParameter *cPar; in getFunction() local 355 …for (cPar = cFun->parameters->first(), cArg = args->first(); cPar != NULL; cPar = cFun->parameters… in getFunction() 358 if ((cPar->type & SLC_TYPE_MASK) & (cArg->type & SLC_TYPE_MASK)) { in getFunction() 361 if (cPar->type & SLC_VECTOR) { in getFunction() 399 if (cPar == NULL) return cFun; in getFunction() 404 CParameter *cPar; in getFunction() local 413 …for (cPar = cFun->parameters->first(), cArg = args->first(); cPar != NULL; cPar = cFun->parameters… in getFunction() 417 if ((cPar->type & SLC_VECTOR) && (cArg->type & SLC_FLOAT)) continue; in getFunction() 418 if ((cPar->type & SLC_MATRIX) && (cArg->type & SLC_FLOAT)) continue; in getFunction() 419 if ((cPar->type & SLC_MATRIX) && (cArg->type & SLC_VECTOR)) continue; in getFunction() [all …]
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/dports/security/pkcs11-tools/pkcs11-tools-2.5.0/lib/ |
H A D | pkcs11_peekpoke.c | 92 int cPar; in pkcs11_adjust_des_key_parity() local 97 cPar = 0; in pkcs11_adjust_des_key_parity() 100 cPar = !cPar; in pkcs11_adjust_des_key_parity() 102 if(!cPar) in pkcs11_adjust_des_key_parity()
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/dports/games/openclonk/openclonk-release-8.1-src/src/script/ |
H A D | C4Script.cpp | 32 int cPar=0; in FnStringFormat() local 56 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat() 57 StringBuf.AppendFormat(szField, Pars[cPar++].getInt()); in FnStringFormat() 64 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat() 65 StringBuf.AppendCharacter(Pars[cPar++].getInt()); in FnStringFormat() 74 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat() 75 StringBuf.Append(static_cast<const StdStrBuf&>(Pars[cPar++].GetDataString(10))); in FnStringFormat() 83 if (cPar >= ParCount) throw C4AulExecError("format placeholder without parameter"); in FnStringFormat() 85 if (Pars[cPar].GetData()) in FnStringFormat() 87 C4String * pStr = Pars[cPar].getStr(); in FnStringFormat() [all …]
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/dports/textproc/sonic/sonic-1.3.0/cargo-crates/librocksdb-sys-6.7.4/zstd/lib/compress/ |
H A D | zstd_compress.c | 622 assert(ZSTD_checkCParams(cPar)==0); in ZSTD_adjustCParams_internal() 636 if (cPar.windowLog > srcLog) cPar.windowLog = srcLog; in ZSTD_adjustCParams_internal() 638 if (cPar.hashLog > cPar.windowLog) cPar.hashLog = cPar.windowLog; in ZSTD_adjustCParams_internal() 639 { U32 const cycleLog = ZSTD_cycleLog(cPar.chainLog, cPar.strategy); in ZSTD_adjustCParams_internal() 640 if (cycleLog > cPar.windowLog) in ZSTD_adjustCParams_internal() 641 cPar.chainLog -= (cycleLog - cPar.windowLog); in ZSTD_adjustCParams_internal() 644 if (cPar.windowLog < ZSTD_WINDOWLOG_ABSOLUTEMIN) in ZSTD_adjustCParams_internal() 645 cPar.windowLog = ZSTD_WINDOWLOG_ABSOLUTEMIN; /* required for frame header */ in ZSTD_adjustCParams_internal() 647 return cPar; in ZSTD_adjustCParams_internal() 652 cPar = ZSTD_clampCParams(cPar); in ZSTD_adjustCParams() [all …]
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