Searched refs:c_aln (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/ |
| H A D | file_formats.i | 128 char **c_names, **c_aln, *c_id, *c_structure; variable
130 int ret = vrna_file_msa_read(filename.c_str(), &c_names, &c_aln, &c_id, &c_structure, options);
141 std::string seq(c_aln[i]);
145 free(c_aln[i]);
151 free(c_aln);
168 char **c_names, **c_aln, *c_id, *c_structure; variable
170 int ret = vrna_file_msa_read_record(filehandle, &c_names, &c_aln, &c_id, &c_structure, options);
181 std::string seq(c_aln[i]);
185 free(c_aln[i]);
191 free(c_aln);
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/ |
| H A D | RNA_wrap.cpp | 4678 char **c_names, **c_aln, *c_id, *c_structure; in my_file_msa_read() local
4680 int ret = vrna_file_msa_read(filename.c_str(), &c_names, &c_aln, &c_id, &c_structure, options); in my_file_msa_read()
4691 std::string seq(c_aln[i]); in my_file_msa_read()
4695 free(c_aln[i]); in my_file_msa_read()
4701 free(c_aln); in my_file_msa_read()
4718 char **c_names, **c_aln, *c_id, *c_structure; in my_file_msa_read_record() local
4720 int ret = vrna_file_msa_read_record(filehandle, &c_names, &c_aln, &c_id, &c_structure, options); in my_file_msa_read_record()
4731 std::string seq(c_aln[i]); in my_file_msa_read_record()
4735 free(c_aln[i]); in my_file_msa_read_record()
4741 free(c_aln); in my_file_msa_read_record()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/ |
| H A D | RNA_wrap.cpp | 8943 char **c_names, **c_aln, *c_id, *c_structure; in my_file_msa_read() local
8945 int ret = vrna_file_msa_read(filename.c_str(), &c_names, &c_aln, &c_id, &c_structure, options); in my_file_msa_read()
8956 std::string seq(c_aln[i]); in my_file_msa_read()
8960 free(c_aln[i]); in my_file_msa_read()
8966 free(c_aln); in my_file_msa_read()
8983 char **c_names, **c_aln, *c_id, *c_structure; in my_file_msa_read_record() local
8985 int ret = vrna_file_msa_read_record(filehandle, &c_names, &c_aln, &c_id, &c_structure, options); in my_file_msa_read_record()
8996 std::string seq(c_aln[i]); in my_file_msa_read_record()
9000 free(c_aln[i]); in my_file_msa_read_record()
9006 free(c_aln); in my_file_msa_read_record()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/ |
| H A D | RNA_wrap.cpp | 9087 char **c_names, **c_aln, *c_id, *c_structure; in my_file_msa_read() local
9089 int ret = vrna_file_msa_read(filename.c_str(), &c_names, &c_aln, &c_id, &c_structure, options); in my_file_msa_read()
9100 std::string seq(c_aln[i]); in my_file_msa_read()
9104 free(c_aln[i]); in my_file_msa_read()
9110 free(c_aln); in my_file_msa_read()
9127 char **c_names, **c_aln, *c_id, *c_structure; in my_file_msa_read_record() local
9129 int ret = vrna_file_msa_read_record(filehandle, &c_names, &c_aln, &c_id, &c_structure, options); in my_file_msa_read_record()
9140 std::string seq(c_aln[i]); in my_file_msa_read_record()
9144 free(c_aln[i]); in my_file_msa_read_record()
9150 free(c_aln); in my_file_msa_read_record()
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