| /dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
| H A D | align_hirschberg.h | 202 String<TScoreValue> c_score; in globalAlignment() local
203 resize(c_score,len2 + 1); in globalAlignment()
423 c_score[i] = border; in globalAlignment()
432 s = c_score[_begin2(target)]; in globalAlignment()
438 sg = score_gap + ((c_score[j] > c_score[j - 1]) ? c_score[j] : c_score[j - 1]); in globalAlignment()
441 s = c_score[j]; in globalAlignment()
449 s = c_score[_begin2(target)]; in globalAlignment()
463 s = c_score[j]; in globalAlignment()
467 c_score[j] = sd; in globalAlignment()
474 c_score[j] = sg2; in globalAlignment()
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| H A D | align_myers.h | 424 String<TScoreValue> c_score; in globalAlignment() local
425 resize(c_score,len_x + 1); in globalAlignment()
784 c_score[pos] = score; in globalAlignment()
806 c_score[pos + 1] = score; in globalAlignment()
872 c_score[pos + 1] = score; in globalAlignment()
927 c_score[pos] += score; in globalAlignment()
930 if(c_score[pos]> max) in globalAlignment()
933 max = c_score[pos]; in globalAlignment()
999 c_score[pos] += score; in globalAlignment()
1002 if(c_score[pos] > max) in globalAlignment()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | global_alignment_hirschberg_impl.h | 383 String<TScoreValue> c_score; in _globalAlignment() local
384 resize(c_score,len2 + 1); in _globalAlignment()
614 c_score[i] = border; in _globalAlignment()
623 s = c_score[_begin2(target)]; in _globalAlignment()
629 sg = score_gap + ((c_score[j] > c_score[j - 1]) ? c_score[j] : c_score[j - 1]); in _globalAlignment()
632 s = c_score[j]; in _globalAlignment()
640 s = c_score[_begin2(target)]; in _globalAlignment()
654 s = c_score[j]; in _globalAlignment()
658 c_score[j] = sd; in _globalAlignment()
665 c_score[j] = sg2; in _globalAlignment()
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| H A D | global_alignment_myers_hirschberg_impl.h | 236 String<TScoreValue> c_score; in _globalAlignment() local
237 resize(c_score, len_x + 1, 0); in _globalAlignment()
521 c_score[pos] = score; in _globalAlignment()
542 c_score[pos + 1] = score; in _globalAlignment()
633 c_score[_end1(target)] += score; in _globalAlignment()
659 c_score[pos] += score; in _globalAlignment()
662 if(c_score[pos]> max) in _globalAlignment()
665 max = c_score[pos]; in _globalAlignment()
728 c_score[pos] += score; in _globalAlignment()
731 if(c_score[pos] > max) in _globalAlignment()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | global_alignment_hirschberg_impl.h | 383 String<TScoreValue> c_score; in _globalAlignment() local
384 resize(c_score,len2 + 1); in _globalAlignment()
614 c_score[i] = border; in _globalAlignment()
623 s = c_score[_begin2(target)]; in _globalAlignment()
629 sg = score_gap + ((c_score[j] > c_score[j - 1]) ? c_score[j] : c_score[j - 1]); in _globalAlignment()
632 s = c_score[j]; in _globalAlignment()
640 s = c_score[_begin2(target)]; in _globalAlignment()
654 s = c_score[j]; in _globalAlignment()
658 c_score[j] = sd; in _globalAlignment()
665 c_score[j] = sg2; in _globalAlignment()
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| H A D | global_alignment_myers_hirschberg_impl.h | 236 String<TScoreValue> c_score; in _globalAlignment() local
237 resize(c_score, len_x + 1, 0); in _globalAlignment()
521 c_score[pos] = score; in _globalAlignment()
542 c_score[pos + 1] = score; in _globalAlignment()
633 c_score[_end1(target)] += score; in _globalAlignment()
659 c_score[pos] += score; in _globalAlignment()
662 if(c_score[pos]> max) in _globalAlignment()
665 max = c_score[pos]; in _globalAlignment()
728 c_score[pos] += score; in _globalAlignment()
731 if(c_score[pos] > max) in _globalAlignment()
[all …]
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | global_alignment_hirschberg_impl.h | 403 String<TScoreValue> c_score; in _globalAlignment() local
404 resize(c_score,len2 + 1); in _globalAlignment()
634 c_score[i] = border; in _globalAlignment()
643 s = c_score[_begin2(target)]; in _globalAlignment()
649 sg = score_gap + ((c_score[j] > c_score[j - 1]) ? c_score[j] : c_score[j - 1]); in _globalAlignment()
652 s = c_score[j]; in _globalAlignment()
660 s = c_score[_begin2(target)]; in _globalAlignment()
674 s = c_score[j]; in _globalAlignment()
678 c_score[j] = sd; in _globalAlignment()
685 c_score[j] = sg2; in _globalAlignment()
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| H A D | global_alignment_myers_hirschberg_impl.h | 220 String<TScoreValue> c_score; in _globalAlignment() local
221 resize(c_score, len_x + 1, 0); in _globalAlignment()
505 c_score[pos] = score; in _globalAlignment()
526 c_score[pos + 1] = score; in _globalAlignment()
617 c_score[_end1(target)] += score; in _globalAlignment()
643 c_score[pos] += score; in _globalAlignment()
646 if(c_score[pos]> max) in _globalAlignment()
649 max = c_score[pos]; in _globalAlignment()
714 c_score[pos] += score; in _globalAlignment()
717 if(c_score[pos] > max) in _globalAlignment()
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| /dports/multimedia/vmaf/vmaf-2.3.0/libvmaf/src/feature/ |
| H A D | float_ssim.c | 115 double score, l_score, c_score, s_score; in extract() local
118 &score, &l_score, &c_score, &s_score); in extract()
130 c_score, index); in extract()
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| H A D | ssim.h | 21 double *l_score, double *c_score, double *s_score);
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| H A D | ssim.c | 50 double *l_score, double *c_score, double *s_score) in compute_ssim() argument
171 *c_score = (double)c; in compute_ssim()
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| /dports/mail/neomutt/neomutt-20211029/ |
| H A D | score.c | 66 const bool c_score = cs_subset_bool(NeoMutt->sub, "score"); in mutt_check_rescore() local
67 if (OptNeedRescore && c_score) in mutt_check_rescore()
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| H A D | context.c | 146 const bool c_score = cs_subset_bool(NeoMutt->sub, "score"); in ctx_update() local
182 if (c_score) in ctx_update()
194 if (c_score) in ctx_update()
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| H A D | sort.c | 378 const bool c_score = cs_subset_bool(NeoMutt->sub, "score"); in mutt_sort_headers() local
379 if (OptNeedRescore && c_score) in mutt_sort_headers()
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| /dports/security/cargo-audit/rustsec-cargo-audit-v0.15.2/cvss/src/v3/ |
| H A D | base.rs | 149 let c_score = self.c.map(|c| c.score()).unwrap_or(0.0); in impact() localVariable
152 (1.0 - ((1.0 - c_score) * (1.0 - i_score) * (1.0 - a_score)).abs()).into() in impact()
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| /dports/security/cargo-audit/rustsec-cargo-audit-v0.15.2/cargo-audit/cargo-crates/cvss-1.0.1/src/v3/ |
| H A D | base.rs | 149 let c_score = self.c.map(|c| c.score()).unwrap_or(0.0); in impact() localVariable
152 (1.0 - ((1.0 - c_score) * (1.0 - i_score) * (1.0 - a_score)).abs()).into() in impact()
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| /dports/security/maia/maia_mailguard-7f20bd4/php/themes/dgm/css/ |
| H A D | color.css | 72 .c_score {
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| /dports/security/maia/maia_mailguard-7f20bd4/php/themes/dgm/templates/ |
| H A D | list-cache-table.tpl | 14 <div class="cache_score c_score">
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| H A D | cache_pager.tpl | 12 <ul><li><a class="{if $sortby.column == "score"}inny{else}outy{/if} sortbutton panel2 c_score"
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| /dports/math/symphony/SYMPHONY-releases-5.6.17/SYMPHONY/src/LP/ |
| H A D | lp_branch.c | 1011 int c_score = 0; local
1015 if(score_diff > lpetol100) c_score = 100;
1016 else if(score_diff < -lpetol100) c_score = -100;
1019 c_score = 0;
1021 if(score_diff > lpetol100) c_score = 100;
1022 else if(score_diff < -lpetol100) c_score = -100;
1025 if(score_diff > lpetol100) c_score = 100;
1026 else if(score_diff < -lpetol100) c_score = -32;
1028 if(score_diff > lpetol100) c_score = 32;
1029 else if(score_diff < -lpetol100) c_score = -100;
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| /dports/net/pacemaker2/pacemaker-Pacemaker-2.1.1/lib/pacemaker/ |
| H A D | pcmk_sched_promotable.c | 491 int c_score = promotion_score(child, node, not_set_value); in promotion_score() local
494 score = c_score; in promotion_score()
496 score += c_score; in promotion_score()
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| /dports/net/pacemaker1/pacemaker-Pacemaker-1.1.24/pengine/ |
| H A D | master.c | 504 int c_score = master_score(child, node, not_set_value); in master_score() local
507 score = c_score; in master_score()
509 score += c_score; in master_score()
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| /dports/games/shockolate/systemshock-0.8.2-43-ga9eb1b93/src/GameSrc/ |
| H A D | mfdgames.c | 113 uchar c_score; member
562 …ll_dir_x = cur_ws->ball_dir_y = cur_ws->c_spd = cur_ws->p_spd = cur_ws->p_score = cur_ws->c_score = in games_init_pong()
572 int serve_speed = (work_ps->c_score + work_ps->p_score) / 8 + 1; in games_run_pong()
605 if (++work_ps->c_score == 0x7) in games_run_pong()
696 tmp[0] = '0' + cur_ps->c_score; in games_expose_pong()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | falign.c | 2548 Int4 d_score, c_score; in resolve() local
2558 c_score = (*cpt_lscore)(cf,col,diag); in resolve()
2565 …if (c_score > d_score || (c_score == d_score && topo_win(df,cf))) { /* extend the column boundary … in resolve()
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