| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | AlignmentAnnotationUtils.java | 97 String calcId = aa.getCalcId(); in getShownHiddenTypes() local
108 if (!groupLabels.containsKey(calcId)) in getShownHiddenTypes()
113 .get(calcId); in getShownHiddenTypes()
136 if (!shownTypes.containsKey(calcId)) in getShownHiddenTypes()
140 shownTypes.get(calcId).add(labelAsList); in getShownHiddenTypes()
147 if (!hiddenTypes.containsKey(calcId)) in getShownHiddenTypes()
164 for (String calcId : groupLabels.keySet()) in getShownHiddenTypes()
173 if (!shownTypes.containsKey(calcId)) in getShownHiddenTypes()
179 shownTypes.get(calcId).add(groupLabel); in getShownHiddenTypes()
184 if (!hiddenTypes.containsKey(calcId)) in getShownHiddenTypes()
[all …]
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| /dports/biology/jalview/jalview/src/jalview/ws/uimodel/ |
| H A D | AlignAnalysisUIText.java | 35 private String calcId; field in AlignAnalysisUIText
39 return calcId; in getCalcId()
67 String calcId, boolean acceptNucl, boolean acceptProt, in AlignAnalysisUIText() argument
72 this.calcId = calcId; in AlignAnalysisUIText()
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| /dports/biology/jalview/jalview/src/jalview/json/binding/biojson/v1/ |
| H A D | AlignmentAnnotationPojo.java | 67 private String calcId; field in AlignmentAnnotationPojo
142 return calcId; in getCalcId()
145 public void setCalcId(String calcId) in setCalcId() argument
147 this.calcId = calcId; in setCalcId()
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| /dports/biology/jalview/jalview/src/MCview/ |
| H A D | PDBfile.java | 213 public static boolean isCalcIdHandled(String calcId) in isCalcIdHandled() argument
215 return calcId != null && (CALC_ID_PREFIX.equals(calcId)); in isCalcIdHandled()
226 public static String relocateCalcId(String calcId, in relocateCalcId() argument
230 end = calcId.indexOf(CALC_ID_PREFIX, s); in relocateCalcId()
231 String between = calcId.substring(s, end - 1); in relocateCalcId()
233 + calcId.substring(end); in relocateCalcId()
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| /dports/textproc/p5-Excel-Writer-XLSX/Excel-Writer-XLSX-1.09/t/workbook/ |
| H A D | sub_write_calc_pr.t | 31 $expected = '<calcPr calcId="124519" fullCalcOnLoad="1"/>';
46 $expected = '<calcPr calcId="124519" calcMode="autoNoTable" fullCalcOnLoad="1"/>';
61 $expected = '<calcPr calcId="124519" calcMode="manual" calcOnSave="0"/>';
76 $expected = '<calcPr calcId="12345" fullCalcOnLoad="1"/>';
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| H A D | workbook_01.t | 52 <calcPr calcId="124519" fullCalcOnLoad="1"/>
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| H A D | workbook_02.t | 54 <calcPr calcId="124519" fullCalcOnLoad="1"/>
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| H A D | workbook_03.t | 54 <calcPr calcId="124519" fullCalcOnLoad="1"/>
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| /dports/biology/jalview/jalview/src/jalview/ws/jws2/ |
| H A D | JabawsCalcWorker.java | 127 List<AlignmentAnnotation> ourAnnot, String calcId, int alWidth, in createAnnotationRowsForScores() argument
132 .findOrCreateAnnotation(scr.getMethod(), calcId, true, null, in createAnnotationRowsForScores()
143 String calcId, SequenceI dseq, int base, Score scr) in createAnnotationRowsForScores() argument
153 .findOrCreateAnnotation(typeName, calcId, false, dseq, null); in createAnnotationRowsForScores()
163 AlignmentAnnotation newAnnot, String typeName, String calcId, in replaceAnnotationOnAlignmentWith() argument
172 List<AlignmentAnnotation> dsan = dsseq.getAlignmentAnnotations(calcId, in replaceAnnotationOnAlignmentWith()
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| H A D | JabawsMsaInterfaceAlignCalcWorker.java | 141 List<AlignmentAnnotation> ourAnnot, String calcId, int alWidth, in createAnnotationRowsForScores() argument
146 .findOrCreateAnnotation(scr.getMethod(), calcId, true, null, in createAnnotationRowsForScores()
157 String calcId, SequenceI dseq, int base, Score scr) in createAnnotationRowsForScores() argument
167 .findOrCreateAnnotation(typeName, calcId, false, dseq, null); in createAnnotationRowsForScores()
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| H A D | RNAalifoldClient.java | 171 List<AlignmentAnnotation> ourAnnot, String calcId, String struct, in createAnnotationRowforScoreHolder() argument
198 .findOrCreateAnnotation(typename, calcId, false, null, null); in createAnnotationRowforScoreHolder()
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| /dports/audio/sayonara/sayonara-player-5bbf1399332d5d59362ad03bf625f9132be72206/src/Utils/MetaData/ |
| H A D | Genre.cpp | 32 static GenreID calcId(const QString& name) in calcId() function
60 m->id = m->calcId(name); in Genre()
89 return Genre::Private::calcId(name); in calculateId()
105 m->id = Genre::Private::calcId(m->name); in setName()
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| /dports/biology/jalview/jalview/src/jalview/datamodel/ |
| H A D | AlignmentAnnotation.java | 731 this.calcId = annotation.calcId; in AlignmentAnnotation()
1253 protected String calcId = ""; field in AlignmentAnnotation
1268 return calcId; in getCalcId()
1271 public void setCalcId(String calcId) in setCalcId() argument
1273 this.calcId = calcId; in setCalcId()
1659 && ann.getCalcId().equals(calcId))) in findAnnotations()
1680 String calcId) in hasAnnotation() argument
1683 if (calcId != null && !"".equals(calcId)) in hasAnnotation()
1687 if (a.getCalcId() == calcId) in hasAnnotation()
1701 if (calcId == null) in findAnnotation()
[all …]
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| H A D | AnnotatedCollectionI.java | 41 Iterable<AlignmentAnnotation> findAnnotation(String calcId); in findAnnotation() argument
55 String calcId, String label); in findAnnotations() argument
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| H A D | SequenceGroup.java | 1339 public Iterable<AlignmentAnnotation> findAnnotation(String calcId) in findAnnotation() argument
1342 Arrays.asList(getAlignmentAnnotation()), calcId); in findAnnotation()
1347 String calcId, String label) in findAnnotations() argument
1350 Arrays.asList(getAlignmentAnnotation()), seq, calcId, label); in findAnnotations()
1359 public boolean hasAnnotation(String calcId) in hasAnnotation() argument
1362 .hasAnnotation(Arrays.asList(getAlignmentAnnotation()), calcId); in hasAnnotation()
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| H A D | Alignment.java | 1602 String calcId, boolean autoCalc, SequenceI seqRef, in findOrCreateAnnotation() argument
1610 && (calcId == null || annot.getCalcId().equals(calcId)) in findOrCreateAnnotation()
1621 if (calcId != null) in findOrCreateAnnotation()
1623 annot.setCalcId(new String(calcId)); in findOrCreateAnnotation()
1637 public Iterable<AlignmentAnnotation> findAnnotation(String calcId) in findAnnotation() argument
1643 Arrays.asList(getAlignmentAnnotation()), calcId); in findAnnotation()
1650 String calcId, String label) in findAnnotations() argument
1653 Arrays.asList(getAlignmentAnnotation()), seq, calcId, label); in findAnnotations()
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| /dports/textproc/py-openpyxl/openpyxl-2.6.4/openpyxl/workbook/ |
| H A D | properties.py | 87 calcId = Integer() variable in CalcProperties
102 calcId=124519, argument
116 self.calcId = calcId
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| /dports/biology/jalview/jalview/test/jalview/analysis/ |
| H A D | AlignmentAnnotationUtilsTest.java | 111 for (String calcId : shownTypes.keySet()) in consoleDebug()
113 System.out.println("Visible annotation types for calcId=" + calcId); in consoleDebug()
114 for (List<String> type : shownTypes.get(calcId)) in consoleDebug()
119 for (String calcId : hiddenTypes.keySet()) in consoleDebug()
121 System.out.println("Hidden annotation types for calcId=" + calcId); in consoleDebug()
122 for (List<String> type : hiddenTypes.get(calcId)) in consoleDebug()
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| /dports/biology/jalview/jalview/src/jalview/xml/binding/jalview/ |
| H A D | Annotation.java | 130 protected String calcId; field in Annotation
659 return calcId; in getCalcId()
671 this.calcId = value; in setCalcId()
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| /dports/biology/jalview/jalview/src/jalview/gui/ |
| H A D | AlignViewport.java | 583 public AutoCalcSetting getCalcIdSettingsFor(String calcId) in getCalcIdSettingsFor() argument
585 return calcIdParams.get(calcId); in getCalcIdSettingsFor()
588 public void setCalcIdSettingsFor(String calcId, AutoCalcSetting settings, in setCalcIdSettingsFor() argument
591 calcIdParams.put(calcId, settings); in setCalcIdSettingsFor()
597 Cache.log.debug("trigger update for " + calcId); in setCalcIdSettingsFor()
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| H A D | PopupMenu.java | 986 for (String calcId : hiddenTypes.keySet()) in buildAnnotationTypesMenus()
988 for (List<String> type : hiddenTypes.get(calcId)) in buildAnnotationTypesMenus()
990 addAnnotationTypeToShowHide(showMenu, forSequences, calcId, type, in buildAnnotationTypesMenus()
997 for (String calcId : shownTypes.keySet()) in buildAnnotationTypesMenus()
999 for (List<String> type : shownTypes.get(calcId)) in buildAnnotationTypesMenus()
1001 addAnnotationTypeToShowHide(hideMenu, forSequences, calcId, type, in buildAnnotationTypesMenus()
1050 final List<SequenceI> forSequences, String calcId, in addAnnotationTypeToShowHide() argument
1057 item.setToolTipText(calcId); in addAnnotationTypeToShowHide()
1680 for (String calcId : tipEntries.keySet()) in configureReferenceAnnotationsMenu()
1682 tooltip.append("<br/>" + calcId + "/" + tipEntries.get(calcId)); in configureReferenceAnnotationsMenu()
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| /dports/biology/jalview/jalview/src/jalview/appletgui/ |
| H A D | APopupMenu.java | 1445 for (String calcId : hiddenTypes.keySet()) in buildAnnotationTypesMenus()
1447 for (List<String> type : hiddenTypes.get(calcId)) in buildAnnotationTypesMenus()
1449 addAnnotationTypeToShowHide(showMenu, forSequences, calcId, type, in buildAnnotationTypesMenus()
1456 for (String calcId : shownTypes.keySet()) in buildAnnotationTypesMenus()
1458 for (List<String> type : shownTypes.get(calcId)) in buildAnnotationTypesMenus()
1460 addAnnotationTypeToShowHide(hideMenu, forSequences, calcId, type, in buildAnnotationTypesMenus()
1486 final List<SequenceI> forSequences, String calcId, in addAnnotationTypeToShowHide() argument
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| /dports/biology/jalview/jalview/ |
| H A D | FEATURETODO | 17 ..? calcId for features, too ?
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| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jaxws/src/share/jaxws_classes/com/sun/xml/internal/bind/v2/model/impl/ |
| H A D | PropertyInfoImpl.java | 148 this.id = calcId(); in PropertyInfoImpl()
255 private ID calcId() { in calcId() method in PropertyInfoImpl
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| /dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jaxws/src/share/jaxws_classes/com/sun/xml/internal/bind/v2/model/impl/ |
| H A D | PropertyInfoImpl.java | 148 this.id = calcId(); in PropertyInfoImpl()
255 private ID calcId() { in calcId() method in PropertyInfoImpl
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