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Searched refs:cds_indel_count (Results 1 – 2 of 2) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/seqqa/
H A Dsingle_aln_tests.cpp289 int cds_indel_count = 0; in RunTest() local
507 ++cds_indel_count; in RunTest()
515 ++cds_indel_count; in RunTest()
612 .AddField("cds_indel_count", cds_indel_count); in RunTest()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/
H A Dgene_model.cpp3632 size_t cds_indel_count = 0; in x_SetComment() local
3634 ++(it->GetLength() % 3 ? frameshift_count : cds_indel_count); in x_SetComment()
3638 : cds_indel_count); in x_SetComment()
3678 if (cds_mismatch_count || cds_indel_count || frameshift_count || cds_pct_coverage < 100) in x_SetComment()
3689 if (cds_indel_count) { in x_SetComment()
3691 + s_Count(cds_indel_count, "non-frameshifting indel"); in x_SetComment()
3694 if (cds_mismatch_count || cds_indel_count || frameshift_count) { in x_SetComment()