Searched refs:cds_strand (Results 1 – 3 of 3) sorted by relevance
57 ENa_strand cds_strand = loc_i.IsSetStrand() ? loc_i.GetStrand() : eNa_strand_unknown; variable62 … bool need_to_compare = (cds_strand == eNa_strand_minus) == (trna_strand == eNa_strand_minus);102 ENa_strand cds_strand = loc.IsSetStrand() ? loc.GetStrand() : eNa_strand_unknown; in DISCREPANCY_AUTOFIX() local110 if ((cds_strand == eNa_strand_minus) == (trna_strand == eNa_strand_minus)) { in DISCREPANCY_AUTOFIX()114 if (ovlp_len > 0 && ovlp_len < 3 && cds_strand != eNa_strand_minus) { in DISCREPANCY_AUTOFIX()120 if (ovlp_len > 0 && ovlp_len < 3 && cds_strand == eNa_strand_minus) { in DISCREPANCY_AUTOFIX()285 ENa_strand cds_strand = cds[j]->GetLocation().GetStrand(); variable287 if (cds_strand == eNa_strand_minus && rna_strand != eNa_strand_minus) {290 else if (cds_strand != eNa_strand_minus && rna_strand == eNa_strand_minus) {
3351 const bool cds_strand (cds.first < cds.second); in s_ComputeStats() local3352 if(qstrand ^ cds_strand) { in s_ComputeStats()
12648 Uint1 cds_strand; in RemoveUTRsFromCDSCallback() local12668 cds_strand = SeqLocStrand (sfp->location); in RemoveUTRsFromCDSCallback()12675 } else if (!StrandOk (cds_strand, SeqLocStrand (utr->location))) { in RemoveUTRsFromCDSCallback()12678 if ((cds_strand == Seq_strand_minus && fcontext.right == start) in RemoveUTRsFromCDSCallback()12679 || (cds_strand != Seq_strand_minus && fcontext.left == start)) { in RemoveUTRsFromCDSCallback()12697 } else if (!StrandOk (cds_strand, SeqLocStrand (utr->location))) { in RemoveUTRsFromCDSCallback()12700 if ((cds_strand == Seq_strand_minus && fcontext.left == stop) in RemoveUTRsFromCDSCallback()12701 || (cds_strand != Seq_strand_minus && fcontext.right == stop)) { in RemoveUTRsFromCDSCallback()