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Searched refs:chargeSum (Results 1 – 7 of 7) sorted by relevance

/dports/science/cdk/cdk-cdk-2.3/descriptor/qsarmolecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/
H A DAutocorrelationDescriptorCharge.java88 double[] chargeSum = new double[5]; in calculate() local
94 chargeSum[k] += w[i] * w[j]; in calculate()
96 chargeSum[k] += 0.0; in calculate()
99 if (k > 0) chargeSum[k] = chargeSum[k] / 2; in calculate()
103 for (double aChargeSum : chargeSum) { in calculate()
/dports/science/ergo/ergo-3.8/source/integrals/
H A Dorganize_distrs_mm.h53 ergo_real chargeSum; member
H A Dorganize_distrs_mm.cc45 distr_org_mm_struct::Data::Data() : chargeSum(0) { in Data()
114 ergo_real chargeSum = 0; in generate_multipoles_for_groups() local
198 chargeSum += multipoleCurrGroup->momentList[0]; in generate_multipoles_for_groups()
H A Dintegrals_1el_potential.cc218 ergo_real chargeSum = 0; in create_nuclei_mm_tree() local
226 chargeSum += currAtom->charge; in create_nuclei_mm_tree()
240 currBox->centerOfChargeCoords[k] = cocSumList[k] / chargeSum; in create_nuclei_mm_tree()
H A Dintegrals_2el_J.cc1484 totChargeWholeSystem += boxListTopLevel[i].branchListForJ[branchIndex].org_mm.data.chargeSum; in compute_J_by_boxes_linear()
/dports/science/ergo/ergo-3.8/source/scf/
H A Dscf_utils.cc2309 ergo_real chargeSum = 0; in do_mulliken_atomic_charges() local
2311 chargeSum += electronChargeSums[i]; in do_mulliken_atomic_charges()
2312 …tput(LOG_CAT_INFO, LOG_AREA_SCF, "Sum of Mulliken charges (electrons): %15.7f", (double)chargeSum); in do_mulliken_atomic_charges()
2318 chargeSum = 0; in do_mulliken_atomic_charges()
2320 chargeSum += atomicCharges[i]; in do_mulliken_atomic_charges()
2321 …do_output(LOG_CAT_INFO, LOG_AREA_SCF, "Sum of Mulliken atomic charges: %15.7f", (double)chargeSum); in do_mulliken_atomic_charges()
2338 ergo_real chargeSum = 0; in do_mulliken_spin_densities() local
2340 chargeSum += mullikenCharges[i]; in do_mulliken_spin_densities()
2341 …(LOG_CAT_INFO, LOG_AREA_SCF, "Sum of Mulliken atomic spin densities: %15.7f", (double)chargeSum); in do_mulliken_spin_densities()
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/MolAlign/
H A DO3AAlignMolecules.cpp1176 double chargeSum = fabs((static_cast<MMFF::MMFFMolProperties *>( in o3aMMFFScoringFunc() local
1184 (1.0 + O3_CHARGE_COEFF * chargeSum) / (1.0 + chargeDiff)) * in o3aMMFFScoringFunc()