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Searched refs:chr2 (Results 1 – 25 of 916) sorted by relevance

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/dports/science/hdf5/hdf5-1.10.6/fortran/src/
H A DH5_buildiface.F9061 CHARACTER(LEN=2) :: chr2
152 WRITE(chr2,'(I2)') j
159 WRITE(chr2,'(I2)') j
169 WRITE(chr2,'(I2)') j
176 WRITE(chr2,'(I2)') j
187 WRITE(chr2,'(I2)') j
194 WRITE(chr2,'(I2)') j
204 WRITE(chr2,'(I2)') j
211 WRITE(chr2,'(I2)') j
222 WRITE(chr2,'(I2)') j
[all …]
/dports/science/hdf5/hdf5-1.10.6/hl/fortran/src/
H A DH5HL_buildiface.F9061 CHARACTER(LEN=2) :: chr2
141 WRITE(chr2,'(I2)') j
148 WRITE(chr2,'(I2)') j
159 WRITE(chr2,'(I2)') j
166 WRITE(chr2,'(I2)') j
177 WRITE(chr2,'(I2)') j
188 WRITE(chr2,'(I2)') j
199 WRITE(chr2,'(I2)') j
210 WRITE(chr2,'(I2)') j
221 WRITE(chr2,'(I2)') j
[all …]
/dports/science/hdf5/hdf5-1.10.6/fortran/test/
H A DH5_test_buildiface.F9061 CHARACTER(LEN=2) :: chr2
103 WRITE(chr2,'(I2)') j
108 WRITE(chr2,'(I2)') j
118 WRITE(chr2,'(I2)') j
119 WRITE(11,'(A)') " MODULE PROCEDURE real_eq_kind_"//TRIM(ADJUSTL(chr2))
130 WRITE(chr2,'(I2)') k
154 WRITE(chr2,'(I2)') k
170 WRITE(11,'(A)') ' END SUBROUTINE verify_real_kind_'//TRIM(ADJUSTL(chr2))
214 WRITE(11,'(A)') ' REAL(KIND='//TRIM(ADJUSTL(chr2))//') :: Rel'
217 WRITE(11,'(A)') ' Rel = 1.0_'//TRIM(ADJUSTL(chr2))
[all …]
/dports/biology/bedtools/bedtools2-2.30.0/test/intersect/sortAndNaming/bigTests/
H A Dq500K.bed39665 chr2 2160 2260 104770 100 -
39666 chr2 10821 10921 196894 100 -
39667 chr2 12946 13046 25408 100 +
39668 chr2 26828 26928 185801 100 +
39669 chr2 28740 28840 464803 100 +
39670 chr2 31694 31794 58201 100 +
39671 chr2 34266 34366 358328 100 -
39672 chr2 36798 36898 204189 100 +
39675 chr2 53501 53601 67239 100 -
39676 chr2 67508 67608 12892 100 +
[all …]
H A Ddb500K.bed39528 chr2 3042 3142 384582 100 +
39529 chr2 11033 11133 244171 100 +
39530 chr2 17978 18078 88370 100 -
39531 chr2 25822 25922 247535 100 +
39532 chr2 28180 28280 234837 100 +
39533 chr2 35606 35706 421743 100 +
39534 chr2 46548 46648 457301 100 -
39535 chr2 47313 47413 224778 100 -
39536 chr2 51957 52057 76349 100 +
39543 chr2 84415 84515 16906 100 -
[all …]
/dports/biology/iqtree/IQ-TREE-2.0.6/example/
H A Dexample.cf10158 chr2 223143 6,0,0,0 2,0,0,0 54,0,0,0 6,0,0,0 12,0,0,0 26,0,0,0 20,0,0,0 12,0,0,0 8,0,0,0 10,0,0,0 1…
10159 chr2 267052 6,0,0,0 2,0,0,0 54,0,0,0 6,0,0,0 12,0,0,0 26,0,0,0 20,0,0,0 12,0,0,0 8,0,0,0 10,0,0,0 1…
10160 chr2 1470718 0,6,0,0 0,2,0,0 0,54,0,0 0,6,0,0 0,12,0,0 0,26,0,0 0,20,0,0 0,12,0,0 0,8,0,0 0,10,0,0 …
10161 chr2 1397199 0,6,0,0 0,2,0,0 0,54,0,0 0,5,1,0 0,7,3,0 0,26,0,0 0,20,0,0 0,12,0,0 0,8,0,0 0,10,0,0 0…
10162 chr2 1478972 0,0,0,6 0,0,0,2 0,0,0,54 0,0,0,6 0,0,0,12 0,0,0,26 0,0,0,20 0,0,0,12 0,0,0,8 0,0,0,10 …
10163 chr2 1438932 0,0,6,0 0,0,2,0 0,0,54,0 0,0,6,0 0,0,12,0 0,0,26,0 0,0,20,0 0,0,12,0 0,0,8,0 0,0,10,0 …
10164 chr2 1499735 0,0,0,6 0,0,0,2 0,0,0,54 0,0,0,6 0,0,0,12 0,0,0,26 0,0,0,20 0,0,0,12 0,0,0,8 0,0,0,10 …
10165 chr2 3384593 0,0,0,6 0,0,0,2 0,0,0,54 0,0,0,6 0,0,0,12 0,0,0,26 0,0,0,20 0,0,0,12 0,0,0,8 0,0,0,10 …
10166 chr2 3496704 0,6,0,0 0,2,0,0 0,54,0,0 0,6,0,0 0,12,0,0 0,26,0,0 0,20,0,0 0,12,0,0 0,8,0,0 0,10,0,0 …
10167 chr2 3574571 0,0,0,6 0,0,0,2 0,0,0,54 0,0,0,6 0,0,0,12 0,0,0,26 0,0,0,20 0,0,0,12 0,0,0,8 0,0,0,10 …
[all …]
/dports/biology/py-crossmap/CrossMap-0.5.4/test/
H A Dtest00_hg19.bed3108 chr2 33359663 33624575
109 chr2 44039610 44065958
111 chr2 23608297 23931483
112 chr2 25600111 25896516
113 chr2 26256728 26360323
114 chr2 42795656 42936686
115 chr2 48034058 48132932
116 chr2 58386377 58468515
117 chr2 64319785 64371605
118 chr2 68269331 68290159
[all …]
H A Dtest01_hg19.bed12120 chr2 87754973 87821030 NR_024206 0 + 87821030 87821030 0 2 191,305, 0,65752,
139 chr2 14772809 14780168 NM_145175 0 + 14774103 14774982 0 2 252,6101, 0,1258,
140 chr2 27558408 27560670 NR_038427 0 + 27560670 27560670 0 4 179,179,116,367, 0,750,1669,1895,
145 chr2 69330813 69330887 NR_036073 0 + 69330887 69330887 0 1 74, 0,
158 chr2 120436742 120439694 NM_030577 0 + 120438429 120439365 0 2 110,1287, 0,1665,
162 chr2 171568948 171571077 NR_027433 0 - 171571077 171571077 0 1 2129, 0,
166 chr2 177016112 177017949 NM_014621 0 + 177016361 177017670 0 2 682,614, 0,1223,
171 chr2 219125737 219128582 NM_001077191 0 + 219127447 219128440 0 2 202,1801, 0,1044,
173 chr2 225243414 225266711 NM_024785 0 - 225265135 225266485 0 3 1511,125,958, 0,21683,22339,
176 chr2 233415183 233415283 NR_049797 0 - 233415283 233415283 0 1 100, 0,
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/
H A Dsmall_gene_panel.pileups188 chr2 1499870 1 0 0 0.0124303
189 chr2 1499974 2 0 0 0.0123885
190 chr2 1499985 2 0 0 0.0122653
191 chr2 15468425 1 0 0 0.0160753
192 chr2 21231387 2 0 0 0.0100647
193 chr2 25536827 1 0 0 0.0916018
194 chr2 26799091 2 0 0 0.0664048
195 chr2 27438615 2 0 0 0.0169316
214 chr2 33810638 2 0 0 0.010612
215 chr2 37447477 2 0 0 0.113242
[all …]
/dports/biology/bedtools/bedtools2-2.30.0/test/coverage/
H A Db.bed11 chr2 6 81 17 75 -
12 chr2 39 114 4 75 +
13 chr2 74 149 11 75 -
14 chr2 77 152 1 75 +
15 chr2 114 189 3 75 -
16 chr2 127 202 5 75 -
17 chr2 131 206 13 75 +
18 chr2 137 212 2 75 -
19 chr2 139 214 18 75 -
20 chr2 163 238 14 75 +
/dports/biology/py-biopython/biopython-1.79/Tests/SamBam/
H A Dex1_header.sam3 @SQ SN:chr2 LN:1584
1597 EAS192_3:5:287:334:110 133 chr2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3…
1701 EAS188_7:3:15:568:42 181 chr2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!…
1705 EAS51_64:6:206:994:556 133 chr2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
1799 EAS51_64:7:104:965:517 133 chr2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
2149 EAS139_11:7:53:458:581 133 chr2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<…
2160 EAS188_7:1:177:522:118 69 chr2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<…
2164 EAS51_62:8:52:967:804 133 chr2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<…
2211 EAS1_105:1:141:415:738 69 chr2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<…
2502 EAS114_30:6:4:665:771 69 chr2 862 0 * = 862 0 GTGCTTTATCTGATATCAATGCCGATAAACTGCCT <<<<<<<<<<<<%<8<3…
[all …]
H A Dex1.sam1594 EAS192_3:5:287:334:110 133 chr2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3…
1698 EAS188_7:3:15:568:42 181 chr2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!…
1702 EAS51_64:6:206:994:556 133 chr2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
1796 EAS51_64:7:104:965:517 133 chr2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
2146 EAS139_11:7:53:458:581 133 chr2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<…
2157 EAS188_7:1:177:522:118 69 chr2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<…
2161 EAS51_62:8:52:967:804 133 chr2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<…
2208 EAS1_105:1:141:415:738 69 chr2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<…
2499 EAS114_30:6:4:665:771 69 chr2 862 0 * = 862 0 GTGCTTTATCTGATATCAATGCCGATAAACTGCCT <<<<<<<<<<<<%<8<3…
3044 B7_610:6:111:379:700 133 chr2 1268 0 * = 1268 0 CGCACTGGCAATATTTGTGTGTTTACTTTTTTGCA :1+&;;6;:;918;)…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/ucscreader_test_cases/
H A Dgood11.ucsc11 chr2 1012574 1012773
12 chr2 1143153 1143290
13 chr2 1157279 1157335
14 chr2 1157436 1157493
15 chr2 1196485 1196528
16 chr2 1196631 1196672
17 chr2 1224450 1224537
18 chr2 1231730 1231821
19 chr2 1267728 1267855
20 chr2 1296342 1296471
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/ucscwriter_test_cases/
H A D11.annot.ucsc11 chr2 1012574 1012773
12 chr2 1143153 1143290
13 chr2 1157279 1157335
14 chr2 1157436 1157493
15 chr2 1196485 1196528
16 chr2 1196631 1196672
17 chr2 1224450 1224537
18 chr2 1231730 1231821
19 chr2 1267728 1267855
20 chr2 1296342 1296471
/dports/biology/vcf-split/vcf-split-0.1.3-3-g19713a4/Test/
H A Dcorrect-limited-fields-1.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-8.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-4.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-5.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-9.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-10.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-11.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-2.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-3.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-6.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0
H A Dcorrect-limited-fields-7.vcf3 chr2 21130 . AC A . . . GT 0|0
4 chr2 21151 . C G . . . GT 0|0
5 chr2 21224 . C G . . . GT 0|0
6 chr2 21226 . C T . . . GT 0|0
7 chr2 21251 . C A . . . GT 0|0
8 chr2 21311 . C A . . . GT 0|0
9 chr2 21354 . C A . . . GT 0|0
10 chr2 21370 . AC A . . . GT 0|0
11 chr2 21467 . C T . . . GT 0|0
12 chr2 21493 . T A . . . GT 0|0

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