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Searched refs:chr_col (Results 1 – 8 of 8) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma_io.cpp198 if (header.rs_col == 0 && (header.chr_col == 0 || header.pos_col == 0)) { in ReadFile_snps_header()
214 if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_snps_header()
2413 header.chr_col = 0; in ReadHeader_io()
2449 if (header.chr_col == 0) { in ReadHeader_io()
2450 header.chr_col = header.coln + 1; in ReadHeader_io()
2599 if (header.chr_col != 0 && header.pos_col != 0) { in ReadHeader_io()
2644 if (header.chr_col != 0) { in ReadFile_cat()
2669 } else if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_cat()
3299 } else if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_wsnp()
3418 if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_beta()
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H A Dvc.cpp464 header.chr_col = 0; in ReadHeader_vc()
497 if (header.chr_col == 0) { in ReadHeader_vc()
498 header.chr_col = header.coln + 1; in ReadHeader_vc()
621 if (header.chr_col != 0 && header.pos_col != 0) { in ReadHeader_vc()
695 if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_cor()
865 if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_beta()
1074 if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_cor()
H A Dparam.h95 size_t chr_col; variable
H A Dbslmmdap.cpp254 } else if (header.chr_col != 0 && header.chr_col == i + 1) { in ReadFile_cat()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_adjust.cc213 const uint32_t chr_col = flags & kfAdjustColChrom; in Multcomp() local
214 if (chr_col) { in Multcomp()
403 if (chr_col) { in Multcomp()
H A Dplink2_misc.cc3170 if (chr_col) { in WriteAlleleFreqs()
3269 if (chr_col) { in WriteAlleleFreqs()
3617 if (chr_col) {
3748 if (chr_col) {
4292 if (chr_col) { in WriteMissingnessReports()
4388 if (chr_col) { in WriteMissingnessReports()
4945 const uint32_t chr_col = hardy_flags & kfHardyColChrom; variable
4966 if (chr_col) {
5034 if (chr_col) {
5051 if (chr_col) {
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H A Dplink2_glm.cc5541 if (chr_col) { in GlmLogistic()
5651 if (chr_col) { in GlmLogistic()
5855 if (chr_col) { in GlmLogistic()
5948 if (chr_col) { in GlmLogistic()
7741 if (chr_col) { in GlmLinear()
7840 if (chr_col) { in GlmLinear()
8030 if (chr_col) { in GlmLinear()
8117 if (chr_col) { in GlmLinear()
9846 if (chr_col) { in GlmLinearBatch()
10042 if (chr_col) { in GlmLinearBatch()
[all …]
H A Dplink2_matrix_calc.cc7588 const uint32_t chr_col = (flags / kfVscoreColChrom) & 1; in Vscore() local
7591 if (chr_col) { in Vscore()
7604 …overflow_buf_size = kCompressStreamBlock + max_chr_blen * chr_col + kMaxIdSlen + 128 + (24 * k1LU)… in Vscore()
7614 if (chr_col) { in Vscore()
7788 if (chr_col) { in Vscore()