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Searched refs:ci_total (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dprdt.cpp323 size_t n_bit, n_miss, ci_total, ci_test, n_train_nomiss; in AnalyzePlink() local
362 ci_total = 0; in AnalyzePlink()
372 if ((i == (n_bit - 1)) && ci_total == indicator_idv.size()) { in AnalyzePlink()
375 if (indicator_idv[ci_total] == 1) { in AnalyzePlink()
409 ci_total++; in AnalyzePlink()
H A Dlm.cpp512 int n_bit, n_miss, ci_total, ci_test; in AnalyzePlink() local
562 ci_total = 0; in AnalyzePlink()
570 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink()
573 if (indicator_idv[ci_total] == 0) { in AnalyzePlink()
574 ci_total++; in AnalyzePlink()
595 ci_total++; in AnalyzePlink()
H A Dlmm.cpp1716 int n_bit, n_miss, ci_total, ci_test; in AnalyzePlink() local
1769 ci_total = 0; in AnalyzePlink()
1777 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink()
1780 if (indicator_idv[ci_total] == 0) { in AnalyzePlink()
1781 ci_total++; in AnalyzePlink()
1802 ci_total++; in AnalyzePlink()
2397 int n_bit, n_miss, ci_total, ci_test; in AnalyzePlinkGXE() local
2443 ci_total = 0; in AnalyzePlinkGXE()
2454 if (indicator_idv[ci_total] == 0) { in AnalyzePlinkGXE()
2455 ci_total++; in AnalyzePlinkGXE()
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H A Dgemma_io.cpp1595 size_t n_miss, ci_total; in PlinkKin() local
1636 ci_total = 0; in PlinkKin()
1650 gsl_vector_set(geno, ci_total, 2.0); in PlinkKin()
1654 gsl_vector_set(geno, ci_total, 1.0); in PlinkKin()
1660 gsl_vector_set(geno, ci_total, 0.0); in PlinkKin()
1667 ci_total++; in PlinkKin()
2947 size_t n_miss, ci_total, ci_test; in PlinkKin() local
3009 ci_total = 0; in PlinkKin()
3021 if (indicator_idv[ci_total] == 0) { in PlinkKin()
3022 ci_total++; in PlinkKin()
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H A Dvc.cpp2328 size_t n_miss, ci_total, ci_test; in PlinkXwz() local
2367 ci_total = 0; in PlinkXwz()
2376 if ((i == (n_bit - 1)) && ci_total == ni_total) { in PlinkXwz()
2379 if (indicator_idv[ci_total] == 0) { in PlinkXwz()
2380 ci_total++; in PlinkXwz()
2404 ci_total++; in PlinkXwz()
2581 size_t n_miss, ci_total, ci_test; in PlinkXtXwz() local
2617 ci_total = 0; in PlinkXtXwz()
2629 if (indicator_idv[ci_total] == 0) { in PlinkXtXwz()
2630 ci_total++; in PlinkXtXwz()
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H A Dmvlmm.cpp3428 int n_bit, n_miss, ci_total, ci_test; in AnalyzePlink() local
3682 ci_total = 0; in AnalyzePlink()
3690 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink()
3693 if (indicator_idv[ci_total] == 0) { in AnalyzePlink()
3694 ci_total++; in AnalyzePlink()
3715 ci_total++; in AnalyzePlink()
4421 int n_bit, n_miss, ci_total, ci_test; in AnalyzePlinkGXE() local
4667 ci_total = 0; in AnalyzePlinkGXE()
4679 if (indicator_idv[ci_total] == 0) { in AnalyzePlinkGXE()
4680 ci_total++; in AnalyzePlinkGXE()
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