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Searched refs:clean_files_and_throw (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dvcfsort.c85 void clean_files_and_throw(args_t *args, const char *format, ...) in clean_files_and_throw() function
136 …if ( fh == NULL ) clean_files_and_throw(args, "Cannot write %s: %s\n", blk->fname, strerror(errno)… in buf_flush()
144 …if ( hts_close(fh)!=0 ) clean_files_and_throw(args, "[%s] Error: close failed .. %s\n", __func__,b… in buf_flush()
232 if ( !in ) clean_files_and_throw(args, "Could not read %s\n", args->fname); in sort_blocks()
234 …if ( !args->hdr) clean_files_and_throw(args, "Could not read VCF/BCF headers from %s\n", args->fna… in sort_blocks()
240 if ( ret < -1 ) clean_files_and_throw(args,"Error encountered while parsing the input\n"); in sort_blocks()
253 if ( hts_close(in)!=0 ) clean_files_and_throw(args,"Close failed: %s\n", args->fname); in sort_blocks()
270 if ( ret < -1 ) clean_files_and_throw(args, "Error reading %s\n", blk->fname); in KHEAP_INIT()
273 if ( hts_close(blk->fh)!=0 ) clean_files_and_throw(args, "Close failed: %s\n", blk->fname); in KHEAP_INIT()
291 …if ( !blk->fh ) clean_files_and_throw(args, "Could not read %s: %s\n", blk->fname, strerror(errno)… in merge_blocks()
[all …]
/dports/biology/bcftools/bcftools-1.14/
H A Dvcfsort.c85 void clean_files_and_throw(args_t *args, const char *format, ...) in clean_files_and_throw() function
136 …if ( fh == NULL ) clean_files_and_throw(args, "Cannot write %s: %s\n", blk->fname, strerror(errno)… in buf_flush()
144 …if ( hts_close(fh)!=0 ) clean_files_and_throw(args, "[%s] Error: close failed .. %s\n", __func__,b… in buf_flush()
232 if ( !in ) clean_files_and_throw(args, "Could not read %s\n", args->fname); in sort_blocks()
234 …if ( !args->hdr) clean_files_and_throw(args, "Could not read VCF/BCF headers from %s\n", args->fna… in sort_blocks()
240 if ( ret < -1 ) clean_files_and_throw(args,"Error encountered while parsing the input\n"); in sort_blocks()
253 if ( hts_close(in)!=0 ) clean_files_and_throw(args,"Close failed: %s\n", args->fname); in sort_blocks()
270 if ( ret < -1 ) clean_files_and_throw(args, "Error reading %s\n", blk->fname); in KHEAP_INIT()
273 if ( hts_close(blk->fh)!=0 ) clean_files_and_throw(args, "Close failed: %s\n", blk->fname); in KHEAP_INIT()
291 …if ( !blk->fh ) clean_files_and_throw(args, "Could not read %s: %s\n", blk->fname, strerror(errno)… in merge_blocks()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dvcfsort.c85 void clean_files_and_throw(args_t *args, const char *format, ...) in clean_files_and_throw() function
136 …if ( fh == NULL ) clean_files_and_throw(args, "Cannot write %s: %s\n", blk->fname, strerror(errno)… in buf_flush()
144 …if ( hts_close(fh)!=0 ) clean_files_and_throw(args, "[%s] Error: close failed .. %s\n", __func__,b… in buf_flush()
232 if ( !in ) clean_files_and_throw(args, "Could not read %s\n", args->fname); in sort_blocks()
234 …if ( !args->hdr) clean_files_and_throw(args, "Could not read VCF/BCF headers from %s\n", args->fna… in sort_blocks()
240 if ( ret < -1 ) clean_files_and_throw(args,"Error encountered while parsing the input\n"); in sort_blocks()
253 if ( hts_close(in)!=0 ) clean_files_and_throw(args,"Close failed: %s\n", args->fname); in sort_blocks()
270 if ( ret < -1 ) clean_files_and_throw(args, "Error reading %s\n", blk->fname); in KHEAP_INIT()
273 if ( hts_close(blk->fh)!=0 ) clean_files_and_throw(args, "Close failed: %s\n", blk->fname); in KHEAP_INIT()
291 …if ( !blk->fh ) clean_files_and_throw(args, "Could not read %s: %s\n", blk->fname, strerror(errno)… in merge_blocks()
[all …]
H A Dvcfsort.c.pysam.c87 void clean_files_and_throw(args_t *args, const char *format, ...) in clean_files_and_throw() function
138 …if ( fh == NULL ) clean_files_and_throw(args, "Cannot write %s: %s\n", blk->fname, strerror(errno)… in buf_flush()
146 …if ( hts_close(fh)!=0 ) clean_files_and_throw(args, "[%s] Error: close failed .. %s\n", __func__,b… in buf_flush()
234 if ( !in ) clean_files_and_throw(args, "Could not read %s\n", args->fname); in sort_blocks()
236 …if ( !args->hdr) clean_files_and_throw(args, "Could not read VCF/BCF headers from %s\n", args->fna… in sort_blocks()
242 if ( ret < -1 ) clean_files_and_throw(args,"Error encountered while parsing the input\n"); in sort_blocks()
255 if ( hts_close(in)!=0 ) clean_files_and_throw(args,"Close failed: %s\n", args->fname); in sort_blocks()
272 if ( ret < -1 ) clean_files_and_throw(args, "Error reading %s\n", blk->fname); in KHEAP_INIT()
275 if ( hts_close(blk->fh)!=0 ) clean_files_and_throw(args, "Close failed: %s\n", blk->fname); in KHEAP_INIT()
293 …if ( !blk->fh ) clean_files_and_throw(args, "Could not read %s: %s\n", blk->fname, strerror(errno)… in merge_blocks()
[all …]