Searched refs:cloneSAMRecord (Results 1 – 3 of 3) sorted by relevance
274 firstToWrite = ReadUtils.cloneSAMRecord(rec); in mergeAlignment()275 secondToWrite = ReadUtils.cloneSAMRecord(secondOfPair); in mergeAlignment()309 final SAMRecord out = ReadUtils.cloneSAMRecord(sourceRec); in mergeAlignment()318 final SAMRecord recToWrite = clone ? ReadUtils.cloneSAMRecord(rec) : rec; in mergeAlignment()326 final SAMRecord recToWrite = ReadUtils.cloneSAMRecord(rec); in mergeAlignment()
717 return new SAMRecordToGATKReadAdapter(ReadUtils.cloneSAMRecord(samRecord)); in copy()
63 public static SAMRecord cloneSAMRecord(final SAMRecord originalRead) { in cloneSAMRecord() method in ReadUtils