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Searched refs:cloneSAMRecord (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/mergealignment/
H A DAbstractAlignmentMerger.java274 firstToWrite = ReadUtils.cloneSAMRecord(rec); in mergeAlignment()
275 secondToWrite = ReadUtils.cloneSAMRecord(secondOfPair); in mergeAlignment()
309 final SAMRecord out = ReadUtils.cloneSAMRecord(sourceRec); in mergeAlignment()
318 final SAMRecord recToWrite = clone ? ReadUtils.cloneSAMRecord(rec) : rec; in mergeAlignment()
326 final SAMRecord recToWrite = ReadUtils.cloneSAMRecord(rec); in mergeAlignment()
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/
H A DSAMRecordToGATKReadAdapter.java717 return new SAMRecordToGATKReadAdapter(ReadUtils.cloneSAMRecord(samRecord)); in copy()
H A DReadUtils.java63 public static SAMRecord cloneSAMRecord(final SAMRecord originalRead) { in cloneSAMRecord() method in ReadUtils