/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | cm_file.c | 234 if (cmfp != NULL) cm_file_Close(cmfp); in cm_file_OpenBuffer() 387 if (!cmfp->do_stdin && !cmfp->do_gzip) { in open_engine() 399 cmfp->hfp->f = cmfp->f; in open_engine() 402 cmfp->hfp->do_gzip = cmfp->do_gzip; in open_engine() 403 cmfp->hfp->do_stdin = cmfp->do_stdin; in open_engine() 405 cmfp->hfp->is_pressed = cmfp->is_pressed; in open_engine() 485 if (cmfp != NULL) cm_file_Close(cmfp); in open_engine() 506 if (cmfp->do_gzip && cmfp->f != NULL) { in cm_file_Close() 519 if (!cmfp->do_gzip && !cmfp->do_stdin && cmfp->f != NULL) fclose(cmfp->f); in cm_file_Close() 520 if (cmfp->ffp != NULL) fclose(cmfp->ffp); in cm_file_Close() [all …]
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H A D | cmfetch.c | 64 static void create_ssi_index(ESL_GETOPTS *go, CM_FILE *cmfp); 124 status = cm_file_Open(cmfile, NULL, FALSE, &cmfp, errbuf); in main() 133 if (cmfp->is_pressed && esl_opt_GetBoolean(go, "--index")) { in main() 156 onefetch(go, ofp, keyname, cmfp); in main() 161 cm_file_Close(cmfp); in main() 171 create_ssi_index(ESL_GETOPTS *go, CM_FILE *cmfp) in create_ssi_index() argument 265 if (cmfp->ssi != NULL) { onefetch(go, ofp, key, cmfp); ncm++; } in multifetch() 268 if (cmfp->ssi == NULL) in multifetch() 306 if (cmfp->ssi != NULL) in onefetch() 308 status = cm_file_PositionByKey(cmfp, key); in onefetch() [all …]
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H A D | cmconvert.c | 46 CM_FILE *cmfp = NULL; in main() local 61 …status = cm_file_Open(cmfile, NULL, TRUE, &cmfp, errbuf); /* TRUE says: allow CM file to be in v1.… in main() 72 while ((status = cm_file_Read(cmfp, TRUE, &abc, &cm)) == eslOK) in main() 74 if(cmfp->format == CM_FILE_1 || esl_opt_GetBoolean(go, "--mlhmm")) { in main() 102 …us == eslEFORMAT) cm_Fail("bad file format in CM file %s\n%s", cmfile, cmfp->errbuf); in main() 103 …us == eslEINCOMPAT) cm_Fail("CM file %s contains different alphabets\n%s", cmfile, cmfp->errbuf); in main() 104 …us != eslEOF) cm_Fail("Unexpected error in reading CMs from %s\n%s", cmfile, cmfp->errbuf); in main() 106 cm_file_Close(cmfp); in main()
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H A D | cmscan.c | 500 cm_file_Close(cmfp); in serial_master() 637 cm_file_Close(cmfp); in serial_master() 1409 pli->cmfp = cmfp; /* for four-stage input, pipeline needs <cmfp> */ in mpi_master() 1477 cm_file_Close(cmfp); in mpi_master() 1730 cm_file_Close(cmfp); in mpi_worker() 1787 pli->cmfp = cmfp; /* for four-stage input, pipeline needs <cmfp> */ in mpi_worker() 1954 cm_file_Close(cmfp); in mpi_worker() 2510 cmfp->ssi->nsecondary = 0; in read_glocal_list_file() 2536 if(cmfp->ssi != NULL) cmfp->ssi->nsecondary = save_nsecondary; in read_glocal_list_file() 2598 cmfp->ssi->nsecondary = 0; in read_clan_info_file() [all …]
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H A D | trcyk.c | 23 CM_FILE *cmfp; in main() local 44 cmfp = NULL; in main() 60 if((status = cm_file_Open(cmfile, NULL, FALSE, &cmfp, errbuf)) != eslOK) in main() 62 if ((status = cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslOK) in main() 66 cm_file_Close(cmfp); in main()
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H A D | cmpress.c | 55 CM_FILE *cmfp = NULL; in main() local 71 status = cm_file_OpenNoDB(cmfile, NULL, FALSE, &cmfp, errbuf); in main() 76 …if (cmfp->do_stdin || cmfp->do_gzip) cm_Fail("CM file %s must be a normal file, not gzipped or a s… in main() 80 …if (esl_newssi_AddFile(dbf->nssi, cmfp->fname, 0, &fh) != eslOK) /* 0 = format code (CMs don't hav… in main() 81 ESL_XFAIL(status, errbuf, "Failed to add CM file %s to new SSI index\n", cmfp->fname); in main() 86 while ((status = cm_file_Read(cmfp, TRUE, &abc, &cm)) == eslOK) in main() 144 cm_file_Close(cmfp); in main() 152 cm_file_Close(cmfp); in main()
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H A D | cp9-test.c | 49 CM_FILE *cmfp; /* open CM file for reading */ in main() local 79 …if ((status = cm_file_Open(cmfile, NULL, FALSE, &(cmfp), errbuf)) != eslOK) cm_Fail("Failed to ope… in main() 80 if ((cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslOK) cm_Fail("Failed to read CM"); in main() 81 cm_file_Close(cmfp); in main()
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H A D | cmstat.c | 69 CM_FILE *cmfp; /* open input CM file stream */ in main() local 118 status = cm_file_Open(cmfile, NULL, FALSE, &cmfp, errbuf); in main() 185 while ((status = cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslEOF) in main() 188 else if (status != eslOK) cm_Fail(cmfp->errbuf); in main() 198 if(cmfp->ssi != NULL) { in main() 200 status = cm_file_PositionByKey(cmfp, key); in main() 205 while ((status = cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslEOF) in main() 208 if(cm == NULL) cm_Fail(cmfp->errbuf); in main() 219 cm_Fail(cmfp->errbuf); /* cm_file_Read() returned an error, die. */ in main() 228 cm_file_Close(cmfp); in main()
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H A D | bandcyk-montecarlo-test.c | 54 CM_FILE *cmfp; /* open CM file for reading */ in main() local 86 …if ((status = cm_file_Open(cmfile, NULL, FALSE, &(cmfp), errbuf)) != eslOK) cm_Fail("Failed to ope… in main() 87 if ((cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslOK) cm_Fail("Failed to read CM"); in main() 88 cm_file_Close(cmfp); in main()
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H A D | bandcyk-truncation-test.c | 66 CM_FILE *cmfp; /* open CM file for reading */ in main() local 98 …if ((status = cm_file_Open(cmfile, NULL, FALSE, &(cmfp), errbuf)) != eslOK) cm_Fail("Failed to ope… in main() 99 if ((cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslOK) cm_Fail("Failed to read CM"); in main() 100 cm_file_Close(cmfp); in main()
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H A D | truncyk_check.c | 40 CM_FILE *cmfp; /* open CM file for reading */ in main() local 98 if((status = cm_file_Open(cmfile, NULL, FALSE, &cmfp, errbuf)) != eslOK) in main() 100 if ((status = cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslOK) in main() 218 cm_file_Close(cmfp); in main()
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H A D | sub_cm-test.c | 56 CM_FILE *cmfp; /* open CM file for reading */ in main() local 148 …if ((status = cm_file_Open(cmfile, NULL, FALSE, &(cmfp), errbuf)) != eslOK) cm_Fail("Failed to ope… in main() 149 if ((cm_file_Read(cmfp, TRUE, &abc, &cm)) != eslOK) cm_Fail("Failed to read CM"); in main() 150 cm_file_Close(cmfp); in main()
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H A D | cmsim.c | 78 CM_FILE *cmfp; /* open input CM file stream */ member 159 cfg.cmfp = NULL; /* opened in init_cfg() */ in main() 174 if (cfg.cmfp != NULL) cm_file_Close(cfg.cmfp); in main() 210 …if((status = cm_file_Open(cfg->cmfile, NULL, FALSE, &(cfg->cmfp), errbuf)) != eslOK) return status; in init_cfg() 274 while ((status = cm_file_Read(cfg->cmfp, TRUE, &(cfg->abc), &cm)) == eslOK) in master() 373 if(status != eslEOF) cm_Fail(cfg->cmfp->errbuf); in master()
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/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
H A D | train_main.c | 55 FILE *cmfp; /* OUTPUT: fp to cvfile */ in main() local 379 if ((cmfp = fopen(cmfile, "w")) == NULL) in main() 382 if (do_flatformat && ! WriteCM(cmfp, cm)) in main() 384 else if (! WriteBinaryCM(cmfp, cm)) in main() 386 fclose(cmfp); in main()
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H A D | build_main.c | 55 FILE *cmfp; /* OUTPUT: fp to cmfile */ in main() local 293 if ((cmfp = fopen(cmfile, "w")) == NULL) in main() 295 if (! WriteCM(cmfp, cm)) in main() 297 fclose(cmfp); in main()
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/dports/biology/infernal/infernal-1.1.3/src/impl_sse/ |
H A D | sse_cmsearch.c | 74 CM_FILE *cmfp; /* open input CM file stream */ in main() local 127 status = cm_file_Open(cmfile, NULL, FALSE, &cmfp, errbuf); in main() 131 status = cm_file_Read(cmfp, TRUE, &abc, &cm); in main() 132 if(status != eslOK) cm_Fail(cmfp->errbuf); in main() 133 status = cm_file_Read(cmfp, TRUE, &abc, NULL); in main() 134 if(status != eslEOF) cm_Fail("CM file %s does not contain just one CM\n", cmfp->fname); in main() 135 cm_file_Close(cmfp); in main()
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/dports/devel/tinygo/tinygo-0.14.1/llvm-project/clang/test/SemaCXX/ |
H A D | builtins.cpp | 70 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 75 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/llvm11/llvm-11.0.1.src/tools/clang/test/SemaCXX/ |
H A D | builtins.cpp | 69 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 74 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/llvm90/llvm-9.0.1.src/tools/clang/test/SemaCXX/ |
H A D | builtins.cpp | 70 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 75 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/clang/test/SemaCXX/ |
H A D | builtins.cpp | 69 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 74 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/llvm10/llvm-10.0.1.src/tools/clang/test/SemaCXX/ |
H A D | builtins.cpp | 70 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 75 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/llvm80/llvm-8.0.1.src/tools/clang/test/SemaCXX/ |
H A D | builtins.cpp | 70 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 75 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/clang/test/SemaCXX/ |
H A D | builtins.cpp | 69 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 74 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/clang/test/SemaCXX/ |
H A D | builtins.cpp | 69 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 74 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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/dports/devel/llvm12/llvm-project-12.0.1.src/clang/test/SemaCXX/ |
H A D | builtins.cpp | 69 MemFnType mfp, ConstMemFnType cmfp, int (&Arr)[5]) { in test_builtin_launder_diags() argument 74 …__builtin_launder(cmfp); // expected-error {{non-pointer argument to '__builtin_launder' is not al… in test_builtin_launder_diags()
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