Searched refs:compCharPos (Results 1 – 3 of 3) sorted by relevance
1620 logScaler = lnScaler[compCharPos[c]] + log(max); in CalcLikeAdgamma()1695 logScaler += lnScaler[compCharPos[c]] + log(max); in CalcLikeAdgamma()10707 i = compCharPos[c] - m->compCharStart; in PrintAncStates_Bin()10889 i = compCharPos[c] - m->compCharStart; in PrintAncStates_Gen()11065 i = compCharPos[c] - m->compCharStart; in PrintAncStates_NUC4()11184 k = compCharPos[c] - m->compCharStart; in PrintAncStates_Std()12359 j = compCharPos[c] - m->compCharStart; in PrintSiteRates_Gen()12430 j = compCharPos[c] - m->compCharStart; in PrintSiteRates_Std()12610 if (compCharPos[i] == compCharPos[j]) in PrintStates()13063 compressedCharPosition = compCharPos[i]; in PrintStates()[all …]
1587 extern int *compCharPos; /* char position in compressed matr…
376 compCharPos[origChar[oldColumn]] = newChar; in AddDummyChars()2375 free (compCharPos); in CompressData()2376 compCharPos = NULL; in CompressData()2379 compCharPos = (int *)SafeMalloc((size_t)numChar * sizeof(int)); in CompressData()2380 if (!compCharPos) in CompressData()2386 compCharPos[i] = 0; in CompressData()2534 compCharPos[col[k]] = numCompressedChars; in CompressData()2551 compCharPos[col[k]] = a; in CompressData()12321 free (compCharPos); in FreeModel()