Searched refs:compl_alph (Results 1 – 6 of 6) sorted by relevance
54 ESL_ALLOC(meta->compl_alph, (1+meta->alph_size)*sizeof(int)); in fm_alphabetCreate()56 meta->compl_alph = NULL; in fm_alphabetCreate()62 meta->compl_alph[i] = 3-i; in fm_alphabetCreate()124 if (meta->compl_alph != NULL) free (meta->compl_alph); in fm_alphabetDestroy()
273 next_score = ssvdata->ssv_scores_f[k*Kp + fm_cfg->meta->compl_alph[c]]; in FM_Recurse()274 cons_c = fm_cfg->meta->compl_alph[consensus[k]]; in FM_Recurse()519 sc = ssvdata->ssv_scores_f[k*Kp + fm_cfg->meta->compl_alph[i]]; in FM_getSeeds()
915 int *compl_alph; member