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Searched refs:computeLikelihoodBranch (Results 1 – 6 of 6) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/tree/
H A Dphylosupertreeplen.h154 virtual double computeLikelihoodBranch(PhyloNeighbor *dad_branch, PhyloNode *dad);
H A Dphylosupertreeplen.cpp320 …part_info[part].cur_score = at(part)->computeLikelihoodBranch(nei2_part,(PhyloNode*)nei1_part->nod… in computeFunction()
331 double PhyloSuperTreePlen::computeLikelihoodBranch(PhyloNeighbor *dad_branch, PhyloNode *dad) { in computeLikelihoodBranch() function in PhyloSuperTreePlen
1021 part_info[part].cur_score = at(part)->computeLikelihoodBranch(nei1_new->link_neighbors[part], in swapNNIBranch()
1040 … part_info[part].cur_score = at(part)->computeLikelihoodBranch(saved_nei[0]->link_neighbors[part], in swapNNIBranch()
H A Dphylotreesse.cpp214 double PhyloTree::computeLikelihoodBranch(PhyloNeighbor *dad_branch, PhyloNode *dad) { in computeLikelihoodBranch() function in PhyloTree
1549 computeLikelihoodBranch(dad_branch, dad); in computeMarginalAncestralState()
H A Dphylotree.cpp1244 score = computeLikelihoodBranch(current_it, (PhyloNode*) current_it_back->node); in computeLikelihood()
1334 score = computeLikelihoodBranch(current_it, (PhyloNode*)current_it_back->node); in computePatternLhCat()
2208 double l0 = computeLikelihoodBranch(dad_nei, dad); in approxOneBranch()
2210 double l1 = computeLikelihoodBranch(dad_nei, dad); in approxOneBranch()
2212 double l2 = computeLikelihoodBranch(dad_nei, dad); in approxOneBranch()
2436 lh_zero_branch = computeLikelihoodBranch(dad_branch, dad); in computeLikelihoodZeroBranch()
2513 return -computeLikelihoodBranch(current_it, (PhyloNode*) current_it_back->node); in computeFunction()
2709 …double tree_lh = computeLikelihoodBranch((PhyloNeighbor*)nodes[0]->findNeighbor(nodes2[0]), (Phylo… in optimizeAllBranches()
4288 score = computeLikelihoodBranch((PhyloNeighbor*)dad->neighbors.back(), dad); in assessSPRMove()
H A Dphylotreemixlen.cpp524 return -computeLikelihoodBranch(current_it, (PhyloNode*)current_it_back->node); in targetFunk()
H A Dphylotree.h880 virtual double computeLikelihoodBranch(PhyloNeighbor *dad_branch, PhyloNode *dad);