Home
last modified time | relevance | path

Searched refs:contigHeader (Results 1 – 1 of 1) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/
H A DReadUtils.java898 final SAMSequenceRecord contigHeader = header.getSequence(referenceIndex); in alignmentAgreesWithHeader() local
900 return read.isUnmapped() || read.getStart() <= contigHeader.getSequenceLength(); in alignmentAgreesWithHeader()