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Searched refs:convertIntToString (Results 1 – 25 of 44) sorted by relevance

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/dports/biology/iqtree/IQ-TREE-2.0.6/model/
H A Drateheterotachy.cpp68 name += convertIntToString(ncategory); in setNCategory()
70 full_name += " with " + convertIntToString(ncategory) + " categories"; in setNCategory()
74 checkpoint->startStruct("RateHeterotachy" + convertIntToString(ncategory)); in startCheckpoint()
H A Dratekategory.cpp29 name += convertIntToString(ncategory); in RateKategory()
31 full_name += " with " + convertIntToString(ncategory) + " categories"; in RateKategory()
H A Drateheterotachyinvar.cpp20 checkpoint->startStruct("RateHeterotachyInvar" + convertIntToString(ncategory)); in startCheckpoint()
H A Dratefreeinvar.cpp20 checkpoint->startStruct("RateFreeInvar" + convertIntToString(ncategory)); in startCheckpoint()
H A Dratefree.cpp69 checkpoint->startStruct("RateFree" + convertIntToString(ncategory)); in startCheckpoint()
121 name += convertIntToString(ncategory); in setNCategory()
123 full_name += " with " + convertIntToString(ncategory) + " categories"; in setNCategory()
H A Dmodelmorphology.cpp33 …outWarning("GTRX multistate model will estimate " + convertIntToString(getNumRateEntries()-1) + " … in init()
H A Drategamma.cpp79 name = "+G" + convertIntToString(ncategory); in setNCategory()
80 full_name = "Gamma with " + convertIntToString(ncategory) + " categories"; in setNCategory()
H A Dratemeyerdiscrete.cpp191 name += convertIntToString(ncategory); in RateMeyerDiscrete()
193 full_name += " with " + convertIntToString(ncategory) + " categories"; in RateMeyerDiscrete()
H A Dmodelprotein.cpp932 throw "Row " + convertIntToString(row) + " does not sum to 0"; in readRates()
H A Dmodelmixture.cpp1407 checkpoint->startStruct("ModelMixture" + convertIntToString(getNMixtures())); in startCheckpoint()
1419 checkpoint->startStruct("Component" + convertIntToString(part)); in saveCheckpoint()
1439 checkpoint->startStruct("Component" + convertIntToString(part)); in restoreCheckpoint()
H A Dmodelpomo.cpp86 "PoMo with N=" + convertIntToString(N) + " and " + in init_sampling_method()
89 convertIntToString(num_states) + " states in total;"; in init_sampling_method()
209 this->name += "+N" + convertIntToString(N); in init()
H A Dmodeldna.cpp279 outError("More than " + convertIntToString(nrates) + " rate parameters specified in " + str); in readRates()
/dports/biology/iqtree/IQ-TREE-2.0.6/main/
H A Dtimetree.cpp59 string line_out = "Line " + convertIntToString(line_num) + ": "; in readDateFile()
207 …StrVector arg = {"lsd", "-i", treefile, "-s", convertIntToString(tree->getAlnNSite()), "-o", basen… in runLSD2()
217 arg.push_back(convertIntToString(Params::getInstance().date_replicates)); in runLSD2()
226 arg.push_back(convertIntToString(Params::getInstance().date_outlier)); in runLSD2()
H A Dphylotesting.h140 rate_name = model->rate_name.substr(0, posR+2) + convertIntToString(cat-1); in restoreCheckpointRminus1()
242 string name = at(model).rate_name.substr(0, posR+2) + convertIntToString(cat-1); in getLowerKModel()
265 string rate_name = at(model).rate_name.substr(posR, 2) + convertIntToString(cat+1); in getHigherKModel()
H A Dphyloanalysis.cpp2310 …" GB) is higher than your computer RAM per CPU-core ("+convertIntToString(total_mem/max_procs/1024… in runTreeReconstruction()
2717 tree->getCheckpoint()->startStruct("run" + convertIntToString(run+1)); in runMultipleTreeReconstruction()
2827 tree->getCheckpoint()->startStruct("run" + convertIntToString(best_run+1)); in runMultipleTreeReconstruction()
3171 …printSiteStateFreq((((string)params.out_prefix)+"."+convertIntToString(sample)+".bootsitefreq").c_… in runStandardBootstrap()
3172 …ignment(params.aln_output_format, (((string)params.out_prefix)+"."+convertIntToString(sample)+".bo… in runStandardBootstrap()
4120 if (!branch->getAttr("gC" + convertIntToString(part), gC)) in assignBranchSupportNew()
4122 branch->getAttr("gD1" + convertIntToString(part), gD1); in assignBranchSupportNew()
4123 branch->getAttr("gD2" + convertIntToString(part), gD2); in assignBranchSupportNew()
4151 if (!branch->getAttr("sC" + convertIntToString(part), sC)) in assignBranchSupportNew()
4153 if (!branch->getAttr("sD1" + convertIntToString(part), sD1)) in assignBranchSupportNew()
[all …]
H A Dphylotesting.cpp1262 ratehet[j].insert(pos+2, convertIntToString(params.min_rate_cats)); in generate()
1266 …ratehet.insert(ratehet.begin() + ins_pos, str.substr(0, pos+2) + convertIntToString(k) + str.subst… in generate()
1900 dest_set.insert(convertIntToString(s.first) + "-" + convertIntToString(s.second)); in mergePairs()
1902 …if (dest_set.find(convertIntToString(s.first) + "-" + convertIntToString(s.second)) == dest_set.en… in mergePairs()
2243 convertIntToString(in_tree->size()-gene_sets.size()+1) + ":" + in testPartitionModel()
/dports/games/bzflag-server/bzflag-2.4.22/plugins/TimeLimit/
H A DTimeLimit.cpp101 std::string convertIntToString(const unsigned int integer) in convertIntToString() function
123 timeList->push_back(convertIntToString(range_begin++)); in parseCommand()
/dports/games/bzflag/bzflag-2.4.22/plugins/TimeLimit/
H A DTimeLimit.cpp101 std::string convertIntToString(const unsigned int integer) in convertIntToString() function
123 timeList->push_back(convertIntToString(range_begin++)); in parseCommand()
/dports/biology/iqtree/IQ-TREE-2.0.6/tree/
H A Ddiscordance.cpp56 …PUT_MEANING(sCF, "Site concordance factor averaged over " + convertIntToString(params->site_concor… in computeSiteConcordance()
57 …PUT_MEANING(sN, "Number of informative sites averaged over " + convertIntToString(params->site_con… in computeSiteConcordance()
239 nei->putAttr(keys[i%3] + convertIntToString(i/3), (double)support[i]/nquartets); in computeSiteConcordance()
241 nei->putAttr(keys[i%3] + convertIntToString(i/3), "NA"); in computeSiteConcordance()
309 nei->putAttr(prefix[i] + convertIntToString(treeid+1), "NA"); in computeGeneConcordance()
327 nei->putAttr(prefix[i] + convertIntToString(treeid+1), concordant); in computeGeneConcordance()
H A Dmtree.h979 key += convertIntToString(node1->id) + "-" in getBranchID()
980 + convertIntToString(node2->id); in getBranchID()
982 key += convertIntToString(node2->id) + "-" in getBranchID()
983 + convertIntToString(node1->id); in getBranchID()
H A Dphylokernelsitemodel.cpp185 … outWarning((string)"Numerical underflow for site " + convertIntToString(i+1)); in computeSitemodelPartialLikelihoodEigen()
334 outWarning((string)"Numerical underflow for site " + convertIntToString(i+1)); in computeSitemodelPartialLikelihoodEigen()
419 outWarning((string)"Numerical underflow for site " + convertIntToString(i+1)); in computeSitemodelPartialLikelihoodEigen()
/dports/biology/iqtree/IQ-TREE-2.0.6/alignment/
H A Dalignment.cpp1367 return string("POMO")+convertIntToString(state); in convertStateBackStr()
1369 return " " + convertIntToString(state); in convertStateBackStr()
1684 … throw "Line " + convertIntToString(line_num) + ": No matching close-bracket ) or } found"; in processSeq()
1688 throw "Line " + convertIntToString(line_num) + ": Unrecognized character " + *it; in processSeq()
1806 throw "Line " + convertIntToString(line_num) + ": Too many sequences detected"; in readPhylipSequential()
1816 …throw ("Line " + convertIntToString(line_num) + ": Sequence " + seq_names[seq_id] + " is too long … in readPhylipSequential()
1954 … throw "Line " + convertIntToString(line_num) + ": New sequence name is not allowed here"; in readClustal()
2019 … throw "Line " + convertIntToString(line_num) + ": Cannot declare sequence name here"; in readMSF()
2024 … throw "Line " + convertIntToString(line_num) + ": No whitespace found after sequence name"; in readMSF()
2042 throw "Line " + convertIntToString(line_num) + ": " + str; in readMSF()
[all …]
H A Dsuperalignment.cpp101 …tError("--subsample must be between -" + convertIntToString(partitions.size()-1) + " and " + conve… in readFromParams()
995 … count += (*it)->checkAbsentStates("partition " + convertIntToString((it-partitions.begin())+1)); in checkAbsentStates()
1284 boot_aln->name = boot_aln->name + "." + convertIntToString(rep); in createBootstrapAlignment()
/dports/biology/iqtree/IQ-TREE-2.0.6/pda/
H A Decopd.cpp635 str_out_1 = convertIntToString(step); in printECOlpUnrooted()
1099 str_out_1 = convertIntToString(params.eco_run); in randomBranLenTrees()
1101 str1 = convertIntToString(params.k_percent); in randomBranLenTrees()
1103 str1 = convertIntToString(params.sub_size); in randomBranLenTrees()
1104 str2 = convertIntToString(params.diet_max); in randomBranLenTrees()
/dports/biology/iqtree/IQ-TREE-2.0.6/utils/
H A Dcheckpoint.cpp68 (*this)[struct_name + convertIntToString(listid)] = line; in load()

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