| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/ |
| H A D | aln_utils.i | 19 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp);
34 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp);
71 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp); in my_aln_mpi()
102 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp);
155 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp);
178 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp);
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| H A D | duplex.i | 106 …m(alignment1.begin(), alignment1.end(), std::back_inserter(aln_vec1), convert_vecstring2veccharcp); in my_aliduplexfold()
109 …m(alignment2.begin(), alignment2.end(), std::back_inserter(aln_vec2), convert_vecstring2veccharcp); in my_aliduplexfold()
124 …m(alignment1.begin(), alignment1.end(), std::back_inserter(aln_vec1), convert_vecstring2veccharcp); in aliduplex_subopt()
127 …m(alignment2.begin(), alignment2.end(), std::back_inserter(aln_vec2), convert_vecstring2veccharcp); in aliduplex_subopt()
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| H A D | eval.i | 149 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
163 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
177 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
191 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
219 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
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| H A D | mfe.i | 71 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp); in my_alifold()
94 convert_vecstring2veccharcp); in my_alifold()
280 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp); in my_circalifold()
307 convert_vecstring2veccharcp); in my_circalifold()
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| H A D | plotting.i | 161 …td::transform(seqs.begin(), seqs.end(), std::back_inserter(seqs_vec), convert_vecstring2veccharcp); in my_PS_rna_plot_snoop_a()
257 convert_vecstring2veccharcp);
262 convert_vecstring2veccharcp);
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| H A D | constraints_SHAPE.i | 34 … transform(shape_files.begin(), shape_files.end(), back_inserter(vc), convert_vecstring2veccharcp);
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| H A D | file_formats.i | 212 transform(names.begin(), names.end(), back_inserter(v_names), convert_vecstring2veccharcp);
214 … transform(alignment.begin(), alignment.end(), back_inserter(v_aln), convert_vecstring2veccharcp);
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| H A D | mfe_window.i | 116 …ransform(alignment.begin(), alignment.end(), std::back_inserter(aln), convert_vecstring2veccharcp);
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| H A D | fold_compound.i | 66 transform(alignment.begin(), alignment.end(), back_inserter(vc), convert_vecstring2veccharcp);
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| H A D | RNA.i | 157 const char *convert_vecstring2veccharcp(const std::string & s){ in convert_vecstring2veccharcp() function
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/ |
| H A D | callbacks-mfe-window.i | 251 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
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| H A D | RNA_wrap.cpp | 6896 const char *convert_vecstring2veccharcp(const std::string & s){ in convert_vecstring2veccharcp() function
7495 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp); in my_consensus_sequence()
7780 …td::transform(seqs.begin(), seqs.end(), std::back_inserter(seqs_vec), convert_vecstring2veccharcp); in my_PS_rna_plot_snoop_a()
7828 convert_vecstring2veccharcp); in file_PS_aln()
7833 convert_vecstring2veccharcp); in file_PS_aln()
8071 convert_vecstring2veccharcp); in my_alifold()
8284 convert_vecstring2veccharcp); in my_circalifold()
9027 transform(names.begin(), names.end(), back_inserter(v_names), convert_vecstring2veccharcp); in my_file_msa_write()
9029 … transform(alignment.begin(), alignment.end(), back_inserter(v_aln), convert_vecstring2veccharcp); in my_file_msa_write()
12022 … transform(shape_files.begin(), shape_files.end(), back_inserter(vc), convert_vecstring2veccharcp); in vrna_fold_compound_t_sc_add_SHAPE_deigan_ali()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/ |
| H A D | callbacks-mfe-window.i | 202 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
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| H A D | RNA_wrap.cpp | 2804 const char *convert_vecstring2veccharcp(const std::string & s){ in convert_vecstring2veccharcp() function
3326 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp); in my_consensus_sequence()
3611 …td::transform(seqs.begin(), seqs.end(), std::back_inserter(seqs_vec), convert_vecstring2veccharcp); in my_PS_rna_plot_snoop_a()
3659 convert_vecstring2veccharcp); in file_PS_aln()
3664 convert_vecstring2veccharcp); in file_PS_aln()
3902 convert_vecstring2veccharcp); in my_alifold()
4115 convert_vecstring2veccharcp); in my_circalifold()
4762 transform(names.begin(), names.end(), back_inserter(v_names), convert_vecstring2veccharcp); in my_file_msa_write()
4764 … transform(alignment.begin(), alignment.end(), back_inserter(v_aln), convert_vecstring2veccharcp); in my_file_msa_write()
7545 … transform(shape_files.begin(), shape_files.end(), back_inserter(vc), convert_vecstring2veccharcp); in vrna_fold_compound_t_sc_add_SHAPE_deigan_ali__SWIG_0()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/ |
| H A D | callbacks-mfe-window.i | 250 …transform(alignment.begin(), alignment.end(), std::back_inserter(vc), convert_vecstring2veccharcp);
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| H A D | RNA_wrap.cpp | 6897 const char *convert_vecstring2veccharcp(const std::string & s){ in convert_vecstring2veccharcp() function
7500 …:transform(alignment.begin(), alignment.end(), std::back_inserter(v), convert_vecstring2veccharcp); in my_consensus_sequence()
7785 …td::transform(seqs.begin(), seqs.end(), std::back_inserter(seqs_vec), convert_vecstring2veccharcp); in my_PS_rna_plot_snoop_a()
7833 convert_vecstring2veccharcp); in file_PS_aln()
7838 convert_vecstring2veccharcp); in file_PS_aln()
8215 convert_vecstring2veccharcp); in my_alifold()
8428 convert_vecstring2veccharcp); in my_circalifold()
9171 transform(names.begin(), names.end(), back_inserter(v_names), convert_vecstring2veccharcp); in my_file_msa_write()
9173 … transform(alignment.begin(), alignment.end(), back_inserter(v_aln), convert_vecstring2veccharcp); in my_file_msa_write()
12159 … transform(shape_files.begin(), shape_files.end(), back_inserter(vc), convert_vecstring2veccharcp); in vrna_fold_compound_t_sc_add_SHAPE_deigan_ali()
[all …]
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