Searched refs:countSetKmersBig (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | BBDuk2.java | 2177 final int a=(kbig<=k ? countSetKmers(r1, filterMaps) : countSetKmersBig(r1, filterMaps)); in run()
2178 final int b=(kbig<=k ? countSetKmers(r2, filterMaps) : countSetKmersBig(r2, filterMaps)); in run()
2657 private final int countSetKmersBig(final Read r, final AbstractKmerTable sets[]){ in countSetKmersBig() method in BBDuk2.ProcessThread
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| H A D | BBDuk.java | 2738 …final int a=(kbig<=k ? countSetKmers(r1, keySets, maxBadKmersR1) : countSetKmersBig(r1, keySets, m… in run()
2739 …final int b=(kbig<=k ? countSetKmers(r2, keySets, maxBadKmersR2) : countSetKmersBig(r2, keySets, m… in run()
3475 …private final int countSetKmersBig(final Read r, final AbstractKmerTable[] sets, final int maxBadK… in countSetKmersBig() method in BBDuk.ProcessThread
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