Searched refs:countVars (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/bbmap/bbmap/current/var2/ |
| H A D | FilterSam.java | 611 …final int vars=(subsOnly ? Read.countSubs(r.match) : Read.countVars(r.match, Var.CALL_SUB, Var.CAL…
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| H A D | CallVariants.java | 1407 final int vars=Read.countVars(r.match, Var.CALL_SUB, Var.CALL_INS, Var.CALL_DEL);
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| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | Read.java | 2359 public static int countVars(byte[] match){ in countVars() method in Read
2360 return countVars(match, true, true, true); in countVars()
2363 public static int countVars(byte[] match, boolean sub, boolean ins, boolean del){ in countVars() method in Read
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