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Searched refs:csra_db (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/readers/sra/
H A Dcsraread.hpp269 CCSraRefSeqIterator(const CCSraDb& csra_db, in CCSraRefSeqIterator() argument
271 : m_Db(csra_db), in CCSraRefSeqIterator()
275 explicit CCSraRefSeqIterator(const CCSraDb& csra_db);
383 CCSraAlignIterator(const CCSraDb& csra_db,
389 CCSraAlignIterator(const CCSraDb& csra_db,
395 CCSraAlignIterator(const CCSraDb& csra_db,
496 CCSraAlignIterator(const CCSraDb& csra_db,
576 CCSraShortReadIterator(const CCSraDb& csra_db,
581 CCSraShortReadIterator(const CCSraDb& csra_db,
584 CCSraShortReadIterator(const CCSraDb& csra_db,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/test/
H A Dvdb_test.cpp749 CCSraDb csra_db; in Run() local
752 csra_db = CCSraDb(mgr, acc_or_path); in Run()
769 csra_db = CCSraDb(mgr, acc_or_path); in Run()
776 csra_db.GetSpotGroups(spot_groups); in Run()
799 CCSraRefSeqIterator ref_it(csra_db, query_idh); in Run()
800 TSeqPos step = csra_db.GetRowSize(); in Run()
851 CCSraRefSeqIterator ref_it(csra_db, query_idh); in Run()
853 TSeqPos step = csra_db.GetRowSize(); in Run()
1038 CCSraShortReadIterator it2(csra_db, in Run()
1227 for ( CCSraAlignIterator it(csra_db, query_idh, in Run()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/
H A Dcsraread.cpp596 : m_Db(csra_db), in CCSraRefSeqIterator()
608 m_Db = csra_db; in CCSraRefSeqIterator()
624 m_Db = csra_db; in CCSraRefSeqIterator()
636 m_Db = csra_db; in CCSraRefSeqIterator()
1041 : m_RefIter(csra_db, ref_id), in CCSraAlignIterator()
1056 : m_RefIter(csra_db, ref_id), in CCSraAlignIterator()
1928 x_Init(csra_db, clip_type); in CCSraShortReadIterator()
1940 x_Init(csra_db, clip_type); in CCSraShortReadIterator()
1950 x_Init(csra_db, clip_type); in CCSraShortReadIterator()
1958 m_Db = csra_db; in x_Init()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/csra/
H A Dcsraloader_impl.cpp1216 void Collect(CCSraDb& csra_db, const CSeq_id_Handle& ref_id,
1228 void SRefStat::Collect(CCSraDb& csra_db, const CSeq_id_Handle& ref_id, in Collect() argument
1234 CCSraAlignIterator ait(csra_db, ref_id, ref_pos); in Collect()