Searched refs:csra_db (Results 1 – 4 of 4) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/readers/sra/ |
H A D | csraread.hpp | 269 CCSraRefSeqIterator(const CCSraDb& csra_db, in CCSraRefSeqIterator() argument 271 : m_Db(csra_db), in CCSraRefSeqIterator() 275 explicit CCSraRefSeqIterator(const CCSraDb& csra_db); 383 CCSraAlignIterator(const CCSraDb& csra_db, 389 CCSraAlignIterator(const CCSraDb& csra_db, 395 CCSraAlignIterator(const CCSraDb& csra_db, 496 CCSraAlignIterator(const CCSraDb& csra_db, 576 CCSraShortReadIterator(const CCSraDb& csra_db, 581 CCSraShortReadIterator(const CCSraDb& csra_db, 584 CCSraShortReadIterator(const CCSraDb& csra_db, [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/test/ |
H A D | vdb_test.cpp | 749 CCSraDb csra_db; in Run() local 752 csra_db = CCSraDb(mgr, acc_or_path); in Run() 769 csra_db = CCSraDb(mgr, acc_or_path); in Run() 776 csra_db.GetSpotGroups(spot_groups); in Run() 799 CCSraRefSeqIterator ref_it(csra_db, query_idh); in Run() 800 TSeqPos step = csra_db.GetRowSize(); in Run() 851 CCSraRefSeqIterator ref_it(csra_db, query_idh); in Run() 853 TSeqPos step = csra_db.GetRowSize(); in Run() 1038 CCSraShortReadIterator it2(csra_db, in Run() 1227 for ( CCSraAlignIterator it(csra_db, query_idh, in Run() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/ |
H A D | csraread.cpp | 596 : m_Db(csra_db), in CCSraRefSeqIterator() 608 m_Db = csra_db; in CCSraRefSeqIterator() 624 m_Db = csra_db; in CCSraRefSeqIterator() 636 m_Db = csra_db; in CCSraRefSeqIterator() 1041 : m_RefIter(csra_db, ref_id), in CCSraAlignIterator() 1056 : m_RefIter(csra_db, ref_id), in CCSraAlignIterator() 1928 x_Init(csra_db, clip_type); in CCSraShortReadIterator() 1940 x_Init(csra_db, clip_type); in CCSraShortReadIterator() 1950 x_Init(csra_db, clip_type); in CCSraShortReadIterator() 1958 m_Db = csra_db; in x_Init() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/csra/ |
H A D | csraloader_impl.cpp | 1216 void Collect(CCSraDb& csra_db, const CSeq_id_Handle& ref_id, 1228 void SRefStat::Collect(CCSraDb& csra_db, const CSeq_id_Handle& ref_id, in Collect() argument 1234 CCSraAlignIterator ait(csra_db, ref_id, ref_pos); in Collect()
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