Searched refs:cstr_tree (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/phyml/phyml-3.3.20200621/src/ |
| H A D | main.c | 164 io->cstr_tree = Read_Tree_File_Phylip(io->fp_in_constraint_tree); in main()
166 if(io->cstr_tree->n_root != NULL) in main()
178 Check_Constraint_Tree_Taxa_Names(io->cstr_tree,cdata); in main()
179 Alloc_Bip(io->cstr_tree); in main()
180 Get_Bip(io->cstr_tree->a_nodes[0], in main()
181 io->cstr_tree->a_nodes[0]->v[0], in main()
182 io->cstr_tree); in main()
204 if(io->cstr_tree && !Check_Topo_Constraints(tree,io->cstr_tree)) in main()
396 if(io->fp_in_constraint_tree != NULL) Free_Tree(io->cstr_tree); in main()
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| H A D | simu.c | 292 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Make_N_Swap()
376 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Make_Best_Swap()
586 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Unswap_N_Branch()
643 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Unswap_N_Branch()
710 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Swap_N_Branch()
763 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Swap_N_Branch()
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| H A D | alrt.c | 815 … if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) Swap(v3,b_fcus->left,b_fcus->rght,v2,tree); in Make_Target_Swap()
820 … if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) Swap(v4,b_fcus->left,b_fcus->rght,v2,tree); in Make_Target_Swap()
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| H A D | invitee.c | 670 …if(tree -> io -> cstr_tree) Find_Surviving_Edges_In_Small_Tree(tree, tree -> io -> cstr_tree); … in PhyTime_XML()
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| H A D | spr.c | 261 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) in Spr_Subtree()
1435 if(!Check_Topo_Constraints(tree,tree->io->cstr_tree)) accept = NO; in Try_One_Spr_Move_Triple()
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| H A D | utilities.h | 1187 …struct __Tree *cstr_tree; /*! pointer to a constraint tree (can be a multifurcating one)… member
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| H A D | init.c | 555 io->cstr_tree = NULL; in Set_Defaults_Input()
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