Searched refs:curSegs (Results 1 – 4 of 4) sorted by relevance
661 curId = curSegs->ids->next; in minEvalueForSequence()697 DenseSegPtr curSegs; in countSeqAligns() local707 if(curSegs->ids == NULL) in countSeqAligns()709 curId = curSegs->ids->next; in countSeqAligns()743 thisId = curSegs->ids->next; in findThreshSequences()809 thisId = curSegs->ids->next; in posConvergenceTest()845 numsegs = curSegs->numseg; in posConvergenceTest()846 thisId = curSegs->ids->next; in posConvergenceTest()862 matchLength = curSegs->lens[0]; in posConvergenceTest()1072 if(curSegs->ids == NULL) in countNumSeq()[all …]
230 DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/ in SeedPruneHitsFromSeedReturn() local250 curSegs = testSegs; in SeedPruneHitsFromSeedReturn()
369 curSegs = (DenseSegPtr) curSeqAlign->segs; in CddfindThreshSequences()370 thisId = curSegs->ids->next; in CddfindThreshSequences()397 thisId = curSegs->id->next; in CddfindDenseDiagThreshSequences()1117 while (curSegs) { in CddposDenseDiagDemographics()1118 queryOffset = curSegs->starts[0]; in CddposDenseDiagDemographics()1120 matchLength = curSegs->len; in CddposDenseDiagDemographics()1128 curSegs = curSegs->next; in CddposDenseDiagDemographics()1187 if(curSegs->ids == NULL) break; in CddposDemographics()1188 curId = curSegs->ids->next; in CddposDemographics()1195 numsegs = curSegs->numseg; in CddposDemographics()[all …]
2759 DenseSegPtr curSegs; in CddCountSeqAligns() local2767 curSegs = (DenseSegPtr) curSeqAlign->segs; in CddCountSeqAligns()2768 if(curSegs->ids == NULL) break; in CddCountSeqAligns()2769 curId = curSegs->ids->next; in CddCountSeqAligns()2793 DenseDiagPtr curSegs; in CddCountDenDiagSeqAligns() local2799 curSegs = (DenseDiagPtr) curSeqAlign->segs; in CddCountDenDiagSeqAligns()2800 if(curSegs->id == NULL) break; in CddCountDenDiagSeqAligns()