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Searched refs:cur_ares (Results 1 – 12 of 12) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Dwm_align.c182 cur_ares->next = NULL; in nsw_malign()
186 ss, cur_ares); in nsw_malign()
195 CHECK_SCORE(cur_ares->min0, &aa1[cur_ares->min1-1], in nsw_malign()
196 cur_ares->max0 - cur_ares->min0, cur_ares->max1-cur_ares->min1, in nsw_malign()
197 cur_ares->res, in nsw_malign()
201 if (!do_rep || cur_ares->rst.score[score_ix] <= score_thresh) { return cur_ares;} in nsw_malign()
242 memcpy(local_aa1,aa1+cur_ares->max1,n1-cur_ares->max1); in nsw_malign()
289 return cur_ares; in nsw_malign()
292 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left"); in nsw_malign()
293 cur_ares = merge_ares_chains(cur_ares, tmpr_ares, score_ix, "right"); in nsw_malign()
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H A Ddropnfa.c1354 cur_ares->next = NULL; in bd_malign()
1355 cur_ares->n1 = n1; in bd_malign()
1415 cur_ares->n1 += l_min; in bd_malign()
1423 cur_ares->sw_score = bd_walign(aa0, n0, aa1, n1, ppst, f_str, hoff, cur_ares); in bd_malign()
1427 cur_ares->nres = 0; in bd_malign()
1428 cur_ares->sw_score=0; in bd_malign()
1429 cur_ares->rst.score[0] = cur_ares->rst.score[1] = cur_ares->rst.score[2] = 0; in bd_malign()
1434 if (!ppst->do_rep || cur_ares->rst.score[score_ix] <= score_thresh) {return cur_ares;} in bd_malign()
1529 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left"); in bd_malign()
1530 cur_ares = merge_ares_chains(cur_ares, tmpr_ares, score_ix, "right"); in bd_malign()
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H A Dlsim4.c50 struct a_res_str *cur_ares, *tmp_ares; in SIM() local
113 cur_ares = a_res; in SIM()
117 cur_ares->next = tmp_ares; in SIM()
118 cur_ares = tmp_ares; in SIM()
146 cur_ares->n1 = N; in SIM()
147 cur_ares->sw_score = cur_ares->rst.score[ppst->score_ix] = score; in SIM()
148 cur_ares->min0 = stari-1; in SIM()
149 cur_ares->min1 = starj-1; in SIM()
152 cur_ares->next = NULL; in SIM()
159 cur_ares->res,ppst->pam2[0],q,r,&cur_ares->nres); in SIM()
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H A Ddropfz3.c2455 struct a_res_str *cur_ares, argument
2484 cur_ares->next = NULL;
2493 return cur_ares;
2505 cur_ares->v_start = sq_start = 0;
2508 else {sq_end = n1 - cur_ares->max1;}
2511 sq_save = sq_end = cur_ares->min0;
2562 sq_start = cur_ares->max0+1;
2581 local_aa1, cur_ares->v_len,
2618 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left");
2619 cur_ares = merge_ares_chains(cur_ares, tmpr_ares, score_ix, "right");
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H A Ddropfz2.c2455 struct a_res_str *cur_ares, argument
2484 cur_ares->next = NULL;
2493 return cur_ares;
2505 cur_ares->v_start = sq_start = 0;
2508 else {sq_end = n1 - cur_ares->max1;}
2511 sq_save = sq_end = cur_ares->min0;
2562 sq_start = cur_ares->max0+1;
2581 local_aa1, cur_ares->v_len,
2618 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left");
2619 cur_ares = merge_ares_chains(cur_ares, tmpr_ares, score_ix, "right");
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H A Ddropfx2.c2359 struct a_res_str *cur_ares, argument
2383 cur_ares->next = NULL;
2415 return cur_ares;
2422 nxyaa = cur_ares->min1;
2424 nxyaa = cur_ares->min0;
2474 nxyaa = n1 - cur_ares->max1 - 1;
2478 nxyaa = n1 - cur_ares->max0 - 1;
2554 return cur_ares;
2557 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left");
2558 cur_ares = merge_ares_chains(cur_ares, tmpr_ares, score_ix, "right");
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H A Ddropfx.c2357 struct a_res_str *cur_ares, argument
2381 cur_ares->next = NULL;
2413 return cur_ares;
2420 nxyaa = cur_ares->min1;
2422 nxyaa = cur_ares->min0;
2472 nxyaa = n1 - cur_ares->max1 - 1;
2476 nxyaa = n1 - cur_ares->max0 - 1;
2552 return cur_ares;
2555 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left");
2556 cur_ares = merge_ares_chains(cur_ares, tmpr_ares, score_ix, "right");
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H A Ddropnsw.c75 struct a_res_str *cur_ares,
H A Dcompacc2.c1116 merge_ares_chains(struct a_res_str *cur_ares, in merge_ares_chains() argument
1123 if (!tmp_ares) return cur_ares; in merge_ares_chains()
1127 for (max_next = cur_ares; max_next; max_next = max_next->next) { in merge_ares_chains()
1141 if (cur_ares->rst.score[score_ix] >= tmp_ares->rst.score[score_ix]) { in merge_ares_chains()
1142 max_ares = max_next = prev_next = cur_ares; in merge_ares_chains()
1147 alt_ares = cur_ares; in merge_ares_chains()
H A Dcompacc2e.c1117 merge_ares_chains(struct a_res_str *cur_ares, in merge_ares_chains() argument
1124 if (!tmp_ares) return cur_ares; in merge_ares_chains()
1128 for (max_next = cur_ares; max_next; max_next = max_next->next) { in merge_ares_chains()
1142 if (cur_ares->rst.score[score_ix] >= tmp_ares->rst.score[score_ix]) { in merge_ares_chains()
1143 max_ares = max_next = prev_next = cur_ares; in merge_ares_chains()
1148 alt_ares = cur_ares; in merge_ares_chains()
H A Ddropnnw2.c106 struct a_res_str *cur_ares,
H A Ddropgsw2.c93 struct a_res_str *cur_ares,