Home
last modified time | relevance | path

Searched refs:curr_seq (Results 1 – 25 of 85) sorted by relevance

1234

/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dgbf2tbl.pl105 my $curr_seq;
130 $curr_seq = "";
395 $curr_seq = $1;
396 $curr_seq =~ s/ //g;
397 $curr_seq = uc $curr_seq;
398 print $FSA_OUT "$curr_seq\n";
/dports/biology/exonerate/exonerate-2.4.0/src/sequence/
H A Dsequence.c717 switch(curr_seq->type){ in Sequence_mask()
723 seq_subseq = curr_seq->data; in Sequence_mask()
725 curr_seq = seq_subseq->sequence; in Sequence_mask()
729 curr_seq = curr_seq->data; in Sequence_mask()
732 seq_filter = curr_seq->data; in Sequence_mask()
734 curr_seq = seq_filter->sequence; in Sequence_mask()
737 seq_translation = curr_seq->data; in Sequence_mask()
750 curr_seq = seq_list->pdata[i]; in Sequence_mask()
752 switch(curr_seq->type){ in Sequence_mask()
754 seq_subseq = curr_seq->data; in Sequence_mask()
[all …]
/dports/math/vtk9/VTK-9.1.0/ThirdParty/hdf5/vtkhdf5/src/
H A DH5Dscatgath.c317 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem()
319 curr_len = len[curr_seq]; in H5D__scatter_mem()
321 H5MM_memcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem()
402 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem()
404 curr_len = len[curr_seq]; in H5D__gather_mem()
406 H5MM_memcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem()
790 size_t curr_seq; /* Current sequence being processed */ in H5D__compound_opt_read() local
798 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read()
806 curr_len = len[curr_seq]; in H5D__compound_opt_read()
807 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read()
[all …]
H A DH5Spoint.c458 curr_seq = 0; in H5S__point_iter_get_seq_list()
467 if (curr_seq > 0) { in H5S__point_iter_get_seq_list()
474 if (loc == (off[curr_seq - 1] + len[curr_seq - 1])) { in H5S__point_iter_get_seq_list()
480 off[curr_seq] = loc; in H5S__point_iter_get_seq_list()
481 len[curr_seq] = iter->elmt_size; in H5S__point_iter_get_seq_list()
484 curr_seq++; in H5S__point_iter_get_seq_list()
489 off[curr_seq] = loc; in H5S__point_iter_get_seq_list()
490 len[curr_seq] = iter->elmt_size; in H5S__point_iter_get_seq_list()
493 curr_seq++; in H5S__point_iter_get_seq_list()
504 if (curr_seq == maxseq) in H5S__point_iter_get_seq_list()
[all …]
H A DH5Sselect.c1563 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local
1571 for (curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate()
1576 curr_off = off[curr_seq]; in H5S_select_iterate()
1579 curr_len = len[curr_seq]; in H5S_select_iterate()
2498 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local
2507 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill()
2511 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill()
2514 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill()
2515 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
/dports/science/hdf5-18/hdf5-1.8.21/src/
H A DH5Dscatgath.c299 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local
331 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem()
333 curr_len = len[curr_seq]; in H5D__scatter_mem()
335 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem()
418 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem()
420 curr_len = len[curr_seq]; in H5D__gather_mem()
422 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem()
796 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read()
804 curr_len = len[curr_seq]; in H5D__compound_opt_read()
805 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read()
[all …]
H A DH5Spoint.c1667 curr_seq = 0; in H5S_point_get_seq_list()
1676 if(curr_seq>0) { in H5S_point_get_seq_list()
1683 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list()
1689 off[curr_seq]=loc; in H5S_point_get_seq_list()
1690 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1693 curr_seq++; in H5S_point_get_seq_list()
1698 off[curr_seq]=loc; in H5S_point_get_seq_list()
1699 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1702 curr_seq++; in H5S_point_get_seq_list()
1713 if(curr_seq==maxseq) in H5S_point_get_seq_list()
[all …]
H A DH5Sselect.c1265 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local
1272 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate()
1277 curr_off = off[curr_seq]; in H5S_select_iterate()
1280 curr_len = len[curr_seq]; in H5S_select_iterate()
2034 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local
2042 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill()
2046 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill()
2049 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill()
2050 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
H A DH5Smpio.c395 size_t curr_seq; /* Current sequence being worked on */ in H5S_mpio_permute_type() local
402 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_mpio_permute_type()
407 curr_off = off[curr_seq]; in H5S_mpio_permute_type()
410 curr_len = len[curr_seq]; in H5S_mpio_permute_type()
/dports/math/vtk6/VTK-6.2.0/ThirdParty/hdf5/vtkhdf5/src/
H A DH5Dscatgath.c301 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local
333 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem()
335 curr_len = len[curr_seq]; in H5D__scatter_mem()
337 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem()
420 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem()
422 curr_len = len[curr_seq]; in H5D__gather_mem()
424 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem()
798 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read()
806 curr_len = len[curr_seq]; in H5D__compound_opt_read()
807 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read()
[all …]
H A DH5Spoint.c1651 curr_seq = 0; in H5S_point_get_seq_list()
1660 if(curr_seq>0) { in H5S_point_get_seq_list()
1667 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list()
1673 off[curr_seq]=loc; in H5S_point_get_seq_list()
1674 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1677 curr_seq++; in H5S_point_get_seq_list()
1682 off[curr_seq]=loc; in H5S_point_get_seq_list()
1683 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1686 curr_seq++; in H5S_point_get_seq_list()
1697 if(curr_seq==maxseq) in H5S_point_get_seq_list()
[all …]
H A DH5Sselect.c1270 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local
1277 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate()
1282 curr_off = off[curr_seq]; in H5S_select_iterate()
1285 curr_len = len[curr_seq]; in H5S_select_iterate()
2028 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local
2036 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill()
2040 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill()
2043 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill()
2044 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
H A DH5Smpio.c397 size_t curr_seq; /* Current sequence being worked on */ in H5S_mpio_permute_type() local
404 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_mpio_permute_type()
409 curr_off = off[curr_seq]; in H5S_mpio_permute_type()
412 curr_len = len[curr_seq]; in H5S_mpio_permute_type()
/dports/science/InsightToolkit/ITK-5.0.1/Modules/ThirdParty/HDF5/src/itkhdf5/src/
H A DH5Dscatgath.c300 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local
336 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem()
338 curr_len = len[curr_seq]; in H5D__scatter_mem()
340 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem()
424 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem()
426 curr_len = len[curr_seq]; in H5D__gather_mem()
428 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem()
823 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read()
831 curr_len = len[curr_seq]; in H5D__compound_opt_read()
832 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read()
[all …]
H A DH5Spoint.c1838 curr_seq = 0; in H5S_point_get_seq_list()
1847 if(curr_seq>0) { in H5S_point_get_seq_list()
1854 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list()
1860 off[curr_seq]=loc; in H5S_point_get_seq_list()
1861 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1864 curr_seq++; in H5S_point_get_seq_list()
1869 off[curr_seq]=loc; in H5S_point_get_seq_list()
1870 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1873 curr_seq++; in H5S_point_get_seq_list()
1884 if(curr_seq==maxseq) in H5S_point_get_seq_list()
[all …]
H A DH5Sselect.c1432 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local
1439 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate()
1444 curr_off = off[curr_seq]; in H5S_select_iterate()
1447 curr_len = len[curr_seq]; in H5S_select_iterate()
2227 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local
2235 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill()
2239 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill()
2242 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill()
2243 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
/dports/science/hdf5/hdf5-1.10.6/src/
H A DH5Dscatgath.c300 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local
336 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem()
338 curr_len = len[curr_seq]; in H5D__scatter_mem()
340 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem()
424 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem()
426 curr_len = len[curr_seq]; in H5D__gather_mem()
428 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem()
823 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read()
831 curr_len = len[curr_seq]; in H5D__compound_opt_read()
832 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read()
[all …]
H A DH5Spoint.c1824 curr_seq = 0; in H5S_point_get_seq_list()
1833 if(curr_seq>0) { in H5S_point_get_seq_list()
1840 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list()
1846 off[curr_seq]=loc; in H5S_point_get_seq_list()
1847 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1850 curr_seq++; in H5S_point_get_seq_list()
1855 off[curr_seq]=loc; in H5S_point_get_seq_list()
1856 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1859 curr_seq++; in H5S_point_get_seq_list()
1870 if(curr_seq==maxseq) in H5S_point_get_seq_list()
[all …]
H A DH5Sselect.c1374 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local
1381 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate()
1386 curr_off = off[curr_seq]; in H5S_select_iterate()
1389 curr_len = len[curr_seq]; in H5S_select_iterate()
2169 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local
2177 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill()
2181 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill()
2184 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill()
2185 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
/dports/math/vtk8/VTK-8.2.0/ThirdParty/hdf5/vtkhdf5/src/
H A DH5Dscatgath.c294 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local
325 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem()
327 curr_len = len[curr_seq]; in H5D__scatter_mem()
329 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem()
409 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem()
411 curr_len = len[curr_seq]; in H5D__gather_mem()
413 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem()
793 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read()
801 curr_len = len[curr_seq]; in H5D__compound_opt_read()
802 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read()
[all …]
H A DH5Spoint.c1700 curr_seq = 0; in H5S_point_get_seq_list()
1709 if(curr_seq>0) { in H5S_point_get_seq_list()
1716 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list()
1722 off[curr_seq]=loc; in H5S_point_get_seq_list()
1723 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1726 curr_seq++; in H5S_point_get_seq_list()
1731 off[curr_seq]=loc; in H5S_point_get_seq_list()
1732 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list()
1735 curr_seq++; in H5S_point_get_seq_list()
1746 if(curr_seq==maxseq) in H5S_point_get_seq_list()
[all …]
H A DH5Sselect.c1434 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local
1441 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate()
1446 curr_off = off[curr_seq]; in H5S_select_iterate()
1449 curr_len = len[curr_seq]; in H5S_select_iterate()
2229 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local
2237 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill()
2241 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill()
2244 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill()
2245 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
H A DH5Smpio.c398 size_t curr_seq; /* Current sequence being worked on */ in H5S_mpio_permute_type() local
405 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_mpio_permute_type()
410 curr_off = off[curr_seq]; in H5S_mpio_permute_type()
413 curr_len = len[curr_seq]; in H5S_mpio_permute_type()
/dports/games/sdlpop/SDLPoP-1.22/src/
H A Dseg006.c576 byte item = *(SEQTBL_0 + Char.curr_seq++); in play_seq()
579 Char.x = char_dx_forward(*(SEQTBL_0 + Char.curr_seq++)); in play_seq()
582 Char.y += *(SEQTBL_0 + Char.curr_seq++); in play_seq()
589 ++Char.curr_seq; in play_seq()
590 ++Char.curr_seq; in play_seq()
595 Char.curr_seq = *(const word*)(SEQTBL_0 + Char.curr_seq); in play_seq()
606 Char.action = *(SEQTBL_0 + Char.curr_seq++); in play_seq()
609 Char.fall_x = *(SEQTBL_0 + Char.curr_seq++); in play_seq()
610 Char.fall_y = *(SEQTBL_0 + Char.curr_seq++); in play_seq()
619 switch (*(SEQTBL_0 + Char.curr_seq++)) { in play_seq()
[all …]
H A Dseg005.c28 Char.curr_seq = seqtbl_offsets[seq_index]; in seqtbl_offset_char()
33 Opp.curr_seq = seqtbl_offsets[seq_index]; in seqtbl_offset_opp()
287 else if (fixes->enable_crouch_after_climbing && Char.curr_seq >= seqtbl_offsets[seq_50_crouch] && in control()
288 Char.curr_seq < seqtbl_offsets[seq_49_stand_up_from_crouch]) // while stooping in control()
299 Char.curr_seq >= seqtbl_offsets[seq_92_put_sword_away] && in control()
300 Char.curr_seq < seqtbl_offsets[seq_93_put_sword_away_fast] in control()

1234