/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | gbf2tbl.pl | 105 my $curr_seq; 130 $curr_seq = ""; 395 $curr_seq = $1; 396 $curr_seq =~ s/ //g; 397 $curr_seq = uc $curr_seq; 398 print $FSA_OUT "$curr_seq\n";
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/dports/biology/exonerate/exonerate-2.4.0/src/sequence/ |
H A D | sequence.c | 717 switch(curr_seq->type){ in Sequence_mask() 723 seq_subseq = curr_seq->data; in Sequence_mask() 725 curr_seq = seq_subseq->sequence; in Sequence_mask() 729 curr_seq = curr_seq->data; in Sequence_mask() 732 seq_filter = curr_seq->data; in Sequence_mask() 734 curr_seq = seq_filter->sequence; in Sequence_mask() 737 seq_translation = curr_seq->data; in Sequence_mask() 750 curr_seq = seq_list->pdata[i]; in Sequence_mask() 752 switch(curr_seq->type){ in Sequence_mask() 754 seq_subseq = curr_seq->data; in Sequence_mask() [all …]
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/dports/math/vtk9/VTK-9.1.0/ThirdParty/hdf5/vtkhdf5/src/ |
H A D | H5Dscatgath.c | 317 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem() 319 curr_len = len[curr_seq]; in H5D__scatter_mem() 321 H5MM_memcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem() 402 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem() 404 curr_len = len[curr_seq]; in H5D__gather_mem() 406 H5MM_memcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem() 790 size_t curr_seq; /* Current sequence being processed */ in H5D__compound_opt_read() local 798 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read() 806 curr_len = len[curr_seq]; in H5D__compound_opt_read() 807 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read() [all …]
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H A D | H5Spoint.c | 458 curr_seq = 0; in H5S__point_iter_get_seq_list() 467 if (curr_seq > 0) { in H5S__point_iter_get_seq_list() 474 if (loc == (off[curr_seq - 1] + len[curr_seq - 1])) { in H5S__point_iter_get_seq_list() 480 off[curr_seq] = loc; in H5S__point_iter_get_seq_list() 481 len[curr_seq] = iter->elmt_size; in H5S__point_iter_get_seq_list() 484 curr_seq++; in H5S__point_iter_get_seq_list() 489 off[curr_seq] = loc; in H5S__point_iter_get_seq_list() 490 len[curr_seq] = iter->elmt_size; in H5S__point_iter_get_seq_list() 493 curr_seq++; in H5S__point_iter_get_seq_list() 504 if (curr_seq == maxseq) in H5S__point_iter_get_seq_list() [all …]
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H A D | H5Sselect.c | 1563 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local 1571 for (curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate() 1576 curr_off = off[curr_seq]; in H5S_select_iterate() 1579 curr_len = len[curr_seq]; in H5S_select_iterate() 2498 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local 2507 for (curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill() 2511 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill() 2514 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill() 2515 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
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/dports/science/hdf5-18/hdf5-1.8.21/src/ |
H A D | H5Dscatgath.c | 299 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local 331 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem() 333 curr_len = len[curr_seq]; in H5D__scatter_mem() 335 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem() 418 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem() 420 curr_len = len[curr_seq]; in H5D__gather_mem() 422 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem() 796 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read() 804 curr_len = len[curr_seq]; in H5D__compound_opt_read() 805 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read() [all …]
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H A D | H5Spoint.c | 1667 curr_seq = 0; in H5S_point_get_seq_list() 1676 if(curr_seq>0) { in H5S_point_get_seq_list() 1683 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list() 1689 off[curr_seq]=loc; in H5S_point_get_seq_list() 1690 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1693 curr_seq++; in H5S_point_get_seq_list() 1698 off[curr_seq]=loc; in H5S_point_get_seq_list() 1699 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1702 curr_seq++; in H5S_point_get_seq_list() 1713 if(curr_seq==maxseq) in H5S_point_get_seq_list() [all …]
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H A D | H5Sselect.c | 1265 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local 1272 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate() 1277 curr_off = off[curr_seq]; in H5S_select_iterate() 1280 curr_len = len[curr_seq]; in H5S_select_iterate() 2034 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local 2042 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill() 2046 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill() 2049 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill() 2050 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
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H A D | H5Smpio.c | 395 size_t curr_seq; /* Current sequence being worked on */ in H5S_mpio_permute_type() local 402 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_mpio_permute_type() 407 curr_off = off[curr_seq]; in H5S_mpio_permute_type() 410 curr_len = len[curr_seq]; in H5S_mpio_permute_type()
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/dports/math/vtk6/VTK-6.2.0/ThirdParty/hdf5/vtkhdf5/src/ |
H A D | H5Dscatgath.c | 301 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local 333 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem() 335 curr_len = len[curr_seq]; in H5D__scatter_mem() 337 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem() 420 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem() 422 curr_len = len[curr_seq]; in H5D__gather_mem() 424 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem() 798 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read() 806 curr_len = len[curr_seq]; in H5D__compound_opt_read() 807 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read() [all …]
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H A D | H5Spoint.c | 1651 curr_seq = 0; in H5S_point_get_seq_list() 1660 if(curr_seq>0) { in H5S_point_get_seq_list() 1667 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list() 1673 off[curr_seq]=loc; in H5S_point_get_seq_list() 1674 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1677 curr_seq++; in H5S_point_get_seq_list() 1682 off[curr_seq]=loc; in H5S_point_get_seq_list() 1683 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1686 curr_seq++; in H5S_point_get_seq_list() 1697 if(curr_seq==maxseq) in H5S_point_get_seq_list() [all …]
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H A D | H5Sselect.c | 1270 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local 1277 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate() 1282 curr_off = off[curr_seq]; in H5S_select_iterate() 1285 curr_len = len[curr_seq]; in H5S_select_iterate() 2028 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local 2036 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill() 2040 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill() 2043 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill() 2044 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
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H A D | H5Smpio.c | 397 size_t curr_seq; /* Current sequence being worked on */ in H5S_mpio_permute_type() local 404 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_mpio_permute_type() 409 curr_off = off[curr_seq]; in H5S_mpio_permute_type() 412 curr_len = len[curr_seq]; in H5S_mpio_permute_type()
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/dports/science/InsightToolkit/ITK-5.0.1/Modules/ThirdParty/HDF5/src/itkhdf5/src/ |
H A D | H5Dscatgath.c | 300 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local 336 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem() 338 curr_len = len[curr_seq]; in H5D__scatter_mem() 340 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem() 424 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem() 426 curr_len = len[curr_seq]; in H5D__gather_mem() 428 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem() 823 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read() 831 curr_len = len[curr_seq]; in H5D__compound_opt_read() 832 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read() [all …]
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H A D | H5Spoint.c | 1838 curr_seq = 0; in H5S_point_get_seq_list() 1847 if(curr_seq>0) { in H5S_point_get_seq_list() 1854 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list() 1860 off[curr_seq]=loc; in H5S_point_get_seq_list() 1861 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1864 curr_seq++; in H5S_point_get_seq_list() 1869 off[curr_seq]=loc; in H5S_point_get_seq_list() 1870 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1873 curr_seq++; in H5S_point_get_seq_list() 1884 if(curr_seq==maxseq) in H5S_point_get_seq_list() [all …]
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H A D | H5Sselect.c | 1432 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local 1439 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate() 1444 curr_off = off[curr_seq]; in H5S_select_iterate() 1447 curr_len = len[curr_seq]; in H5S_select_iterate() 2227 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local 2235 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill() 2239 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill() 2242 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill() 2243 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
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/dports/science/hdf5/hdf5-1.10.6/src/ |
H A D | H5Dscatgath.c | 300 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local 336 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem() 338 curr_len = len[curr_seq]; in H5D__scatter_mem() 340 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem() 424 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem() 426 curr_len = len[curr_seq]; in H5D__gather_mem() 428 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem() 823 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read() 831 curr_len = len[curr_seq]; in H5D__compound_opt_read() 832 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read() [all …]
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H A D | H5Spoint.c | 1824 curr_seq = 0; in H5S_point_get_seq_list() 1833 if(curr_seq>0) { in H5S_point_get_seq_list() 1840 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list() 1846 off[curr_seq]=loc; in H5S_point_get_seq_list() 1847 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1850 curr_seq++; in H5S_point_get_seq_list() 1855 off[curr_seq]=loc; in H5S_point_get_seq_list() 1856 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1859 curr_seq++; in H5S_point_get_seq_list() 1870 if(curr_seq==maxseq) in H5S_point_get_seq_list() [all …]
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H A D | H5Sselect.c | 1374 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local 1381 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate() 1386 curr_off = off[curr_seq]; in H5S_select_iterate() 1389 curr_len = len[curr_seq]; in H5S_select_iterate() 2169 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local 2177 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill() 2181 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill() 2184 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill() 2185 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
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/dports/math/vtk8/VTK-8.2.0/ThirdParty/hdf5/vtkhdf5/src/ |
H A D | H5Dscatgath.c | 294 size_t curr_seq; /* Current sequence being processed */ in H5D__scatter_mem() local 325 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__scatter_mem() 327 curr_len = len[curr_seq]; in H5D__scatter_mem() 329 HDmemcpy(buf + off[curr_seq], tscat_buf, curr_len); in H5D__scatter_mem() 409 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__gather_mem() 411 curr_len = len[curr_seq]; in H5D__gather_mem() 413 HDmemcpy(tgath_buf, buf + off[curr_seq], curr_len); in H5D__gather_mem() 793 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5D__compound_opt_read() 801 curr_len = len[curr_seq]; in H5D__compound_opt_read() 802 H5_CHECK_OVERFLOW(off[curr_seq], hsize_t, size_t); in H5D__compound_opt_read() [all …]
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H A D | H5Spoint.c | 1700 curr_seq = 0; in H5S_point_get_seq_list() 1709 if(curr_seq>0) { in H5S_point_get_seq_list() 1716 if(loc==(off[curr_seq-1]+len[curr_seq-1])) { in H5S_point_get_seq_list() 1722 off[curr_seq]=loc; in H5S_point_get_seq_list() 1723 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1726 curr_seq++; in H5S_point_get_seq_list() 1731 off[curr_seq]=loc; in H5S_point_get_seq_list() 1732 len[curr_seq]=iter->elmt_size; in H5S_point_get_seq_list() 1735 curr_seq++; in H5S_point_get_seq_list() 1746 if(curr_seq==maxseq) in H5S_point_get_seq_list() [all …]
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H A D | H5Sselect.c | 1434 size_t curr_seq; /* Current sequence being worked on */ in H5S_select_iterate() local 1441 for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) { in H5S_select_iterate() 1446 curr_off = off[curr_seq]; in H5S_select_iterate() 1449 curr_len = len[curr_seq]; in H5S_select_iterate() 2229 size_t curr_seq; /* Current sequnce being worked on */ in H5S_select_fill() local 2237 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_select_fill() 2241 buf = (uint8_t *)_buf + off[curr_seq]; in H5S_select_fill() 2244 HDassert((len[curr_seq] % fill_size) == 0); in H5S_select_fill() 2245 H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size)); in H5S_select_fill()
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H A D | H5Smpio.c | 398 size_t curr_seq; /* Current sequence being worked on */ in H5S_mpio_permute_type() local 405 for(curr_seq = 0; curr_seq < nseq; curr_seq++) { in H5S_mpio_permute_type() 410 curr_off = off[curr_seq]; in H5S_mpio_permute_type() 413 curr_len = len[curr_seq]; in H5S_mpio_permute_type()
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/dports/games/sdlpop/SDLPoP-1.22/src/ |
H A D | seg006.c | 576 byte item = *(SEQTBL_0 + Char.curr_seq++); in play_seq() 579 Char.x = char_dx_forward(*(SEQTBL_0 + Char.curr_seq++)); in play_seq() 582 Char.y += *(SEQTBL_0 + Char.curr_seq++); in play_seq() 589 ++Char.curr_seq; in play_seq() 590 ++Char.curr_seq; in play_seq() 595 Char.curr_seq = *(const word*)(SEQTBL_0 + Char.curr_seq); in play_seq() 606 Char.action = *(SEQTBL_0 + Char.curr_seq++); in play_seq() 609 Char.fall_x = *(SEQTBL_0 + Char.curr_seq++); in play_seq() 610 Char.fall_y = *(SEQTBL_0 + Char.curr_seq++); in play_seq() 619 switch (*(SEQTBL_0 + Char.curr_seq++)) { in play_seq() [all …]
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H A D | seg005.c | 28 Char.curr_seq = seqtbl_offsets[seq_index]; in seqtbl_offset_char() 33 Opp.curr_seq = seqtbl_offsets[seq_index]; in seqtbl_offset_opp() 287 else if (fixes->enable_crouch_after_climbing && Char.curr_seq >= seqtbl_offsets[seq_50_crouch] && in control() 288 Char.curr_seq < seqtbl_offsets[seq_49_stand_up_from_crouch]) // while stooping in control() 299 Char.curr_seq >= seqtbl_offsets[seq_92_put_sword_away] && in control() 300 Char.curr_seq < seqtbl_offsets[seq_93_put_sword_away_fast] in control()
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