Searched refs:cyclicAtomList (Results 1 – 2 of 2) sorted by relevance
18 private List<Atom> cyclicAtomList; field in Ring82 return cyclicAtomList; in getCyclicAtomList()108 cyclicAtomList = new ArrayList<Atom>(); in makeCyclicLists()112 cyclicAtomList.add(atom); in makeCyclicLists()122 cyclicAtomList.add(atom); in makeCyclicLists()127 cyclicAtomList.add(atom); in makeCyclicLists()
626 CyclicAtomList cyclicAtomList = new CyclicAtomList(ring.getAtomList()); in findPossibleLetterLocants() local631 Atom atom = cyclicAtomList.previous(); in findPossibleLetterLocants()634 …&& (carbonAtomIndexes.size() == 0 || atom.getAtomNeighbours().contains(cyclicAtomList.peekNext()))… in findPossibleLetterLocants()635 carbonAtomIndexes.add(cyclicAtomList.getIndex()); in findPossibleLetterLocants()663 CyclicAtomList cyclicAtomList = new CyclicAtomList(ring.getAtomList()); in findPossibleNumericalLocants() local666 Atom atom = cyclicAtomList.next(); in findPossibleNumericalLocants()669 …&& (carbonLocants.size() == 0 || atom.getAtomNeighbours().contains(cyclicAtomList.peekPrevious()))… in findPossibleNumericalLocants()